Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KMZ16_RS18185 Genome accession   NZ_CP076445
Coordinates   3508734..3510125 (-) Length   463 a.a.
NCBI ID   WP_029725993.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3503734..3515125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS18150 (KMZ16_17995) flgL 3503905..3504801 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KMZ16_RS18155 (KMZ16_18000) flgK 3504812..3506335 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KMZ16_RS18160 (KMZ16_18005) flgN 3506354..3506836 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KMZ16_RS18165 (KMZ16_18010) flgM 3506852..3507118 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KMZ16_RS18170 (KMZ16_18015) yvyF 3507199..3507618 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KMZ16_RS18175 (KMZ16_18020) comFC 3507692..3508414 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  KMZ16_RS18180 (KMZ16_18025) comFB 3508378..3508674 (-) 297 WP_015483764.1 late competence protein ComFB -
  KMZ16_RS18185 (KMZ16_18030) comFA 3508734..3510125 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  KMZ16_RS18190 (KMZ16_18035) fakBA 3510231..3511076 (-) 846 WP_003227986.1 DegV family protein -
  KMZ16_RS18195 (KMZ16_18040) degU 3511174..3511863 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KMZ16_RS18200 (KMZ16_18045) degS 3511946..3513103 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KMZ16_RS18205 (KMZ16_18050) yvyE 3513320..3513973 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52575.62 Da        Isoelectric Point: 9.9619

>NTDB_id=575371 KMZ16_RS18185 WP_029725993.1 3508734..3510125(-) (comFA) [Bacillus subtilis subsp. subtilis strain ps4100]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNKLAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=575371 KMZ16_RS18185 WP_029725993.1 3508734..3510125(-) (comFA) [Bacillus subtilis subsp. subtilis strain ps4100]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCCTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATA
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991