Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG24_RS05085 Genome accession   NZ_CP094110
Coordinates   1090133..1091308 (+) Length   391 a.a.
NCBI ID   WP_245103644.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085133..1096308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS05060 (MPG24_05060) - 1085422..1086318 (+) 897 WP_245103639.1 response regulator -
  MPG24_RS05065 (MPG24_05065) - 1086542..1087408 (+) 867 WP_245104963.1 5'-3' exonuclease -
  MPG24_RS05070 (MPG24_05070) - 1087471..1088721 (-) 1251 WP_245103641.1 outer membrane family protein -
  MPG24_RS05075 (MPG24_05075) - 1088889..1089755 (+) 867 WP_245103642.1 DnaJ C-terminal domain-containing protein -
  MPG24_RS05080 (MPG24_05080) - 1089765..1090136 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG24_RS05085 (MPG24_05085) rarA 1090133..1091308 (+) 1176 WP_245103644.1 replication-associated recombination protein A Machinery gene
  MPG24_RS05090 (MPG24_05090) fur 1091468..1091920 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG24_RS05095 (MPG24_05095) - 1091940..1092437 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG24_RS05100 (MPG24_05100) - 1092434..1092970 (-) 537 WP_245103646.1 YhcH/YjgK/YiaL family protein -
  MPG24_RS05105 (MPG24_05105) fliY 1092999..1093862 (-) 864 WP_245103648.1 flagellar motor switch protein FliY -
  MPG24_RS05110 (MPG24_05110) fliM 1093866..1094930 (-) 1065 WP_245103650.1 flagellar motor switch protein FliM -
  MPG24_RS05115 (MPG24_05115) - 1094923..1095699 (-) 777 WP_000602379.1 RNA polymerase sigma factor FliA -
  MPG24_RS05120 (MPG24_05120) - 1095677..1095991 (-) 315 WP_245103652.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43795.43 Da        Isoelectric Point: 7.7211

>NTDB_id=575129 MPG24_RS05085 WP_245103644.1 1090133..1091308(+) (rarA) [Helicobacter pylori strain Hpfe071]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLECPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575129 MPG24_RS05085 WP_245103644.1 1090133..1091308(+) (rarA) [Helicobacter pylori strain Hpfe071]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATTGCCCGCATGCTAGAGTGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTGACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.26

100

0.396