Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG24_RS02985 Genome accession   NZ_CP094110
Coordinates   634180..634731 (+) Length   183 a.a.
NCBI ID   WP_245104731.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 629180..639731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS02970 (MPG24_02970) cysS 629360..630757 (-) 1398 WP_245104725.1 cysteine--tRNA ligase -
  MPG24_RS02975 (MPG24_02975) murJ 630758..632218 (-) 1461 WP_245104727.1 murein biosynthesis integral membrane protein MurJ -
  MPG24_RS02980 (MPG24_02980) - 632311..634155 (+) 1845 WP_245104729.1 FapA family protein -
  MPG24_RS02985 (MPG24_02985) ruvA 634180..634731 (+) 552 WP_245104731.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG24_RS02990 (MPG24_02990) - 634783..637398 (+) 2616 WP_245104733.1 DUF3519 domain-containing protein -
  MPG24_RS02995 (MPG24_02995) - 637439..637804 (+) 366 WP_245104735.1 hypothetical protein -
  MPG24_RS03000 (MPG24_03000) - 637836..638972 (-) 1137 WP_000462008.1 NAD-binding protein -
  MPG24_RS03005 (MPG24_03005) rpmB 639122..639310 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20206.81 Da        Isoelectric Point: 9.4311

>NTDB_id=575119 MPG24_RS02985 WP_245104731.1 634180..634731(+) (ruvA) [Helicobacter pylori strain Hpfe071]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575119 MPG24_RS02985 WP_245104731.1 634180..634731(+) (ruvA) [Helicobacter pylori strain Hpfe071]
ATGATAGTGGGCTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGTGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361