Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JNUCC22_RS14550 Genome accession   NZ_CP076408
Coordinates   2987343..2987987 (-) Length   214 a.a.
NCBI ID   WP_216061841.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-22     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982343..2992987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS14515 (JNUCC22_14515) - 2983528..2983959 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  JNUCC22_RS14520 (JNUCC22_14520) - 2983959..2984300 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  JNUCC22_RS14525 (JNUCC22_14525) - 2984293..2985774 (+) 1482 WP_216061840.1 Na+/H+ antiporter subunit D -
  JNUCC22_RS14530 (JNUCC22_14530) - 2985780..2986256 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  JNUCC22_RS14535 (JNUCC22_14535) - 2986256..2986540 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  JNUCC22_RS14540 (JNUCC22_14540) mnhG 2986524..2986898 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JNUCC22_RS14545 (JNUCC22_14545) - 2986938..2987321 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  JNUCC22_RS14550 (JNUCC22_14550) comA 2987343..2987987 (-) 645 WP_216061841.1 response regulator transcription factor Regulator
  JNUCC22_RS14555 (JNUCC22_14555) comP 2988068..2990368 (-) 2301 WP_032867184.1 histidine kinase Regulator
  JNUCC22_RS14560 (JNUCC22_14560) comX 2990382..2990555 (-) 174 WP_012118314.1 competence pheromone ComX -
  JNUCC22_RS14565 (JNUCC22_14565) - 2990524..2991384 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  JNUCC22_RS14570 (JNUCC22_14570) degQ 2991592..2991732 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JNUCC22_RS14575 (JNUCC22_14575) - 2992198..2992539 (+) 342 WP_216061842.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24270.70 Da        Isoelectric Point: 5.1469

>NTDB_id=575078 JNUCC22_RS14550 WP_216061841.1 2987343..2987987(-) (comA) [Bacillus sp. JNUCC-22]
MKKILVIDNHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=575078 JNUCC22_RS14550 WP_216061841.1 2987343..2987987(-) (comA) [Bacillus sp. JNUCC-22]
ATGAAAAAGATACTAGTGATTGATAATCATCCAGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCACTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86