Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KN217_RS17355 Genome accession   NZ_CP076348
Coordinates   3576470..3578062 (+) Length   530 a.a.
NCBI ID   WP_008569736.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain DN36     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3571470..3583062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KN217_RS17335 (KN217_17265) pgeF 3573321..3574058 (-) 738 WP_301619160.1 peptidoglycan editing factor PgeF -
  KN217_RS17340 (KN217_17270) rluD 3574055..3575029 (-) 975 WP_237262566.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KN217_RS17345 (KN217_17275) - 3575177..3576166 (+) 990 WP_155550693.1 outer membrane protein assembly factor BamD -
  KN217_RS17350 (KN217_17280) - 3576253..3576480 (+) 228 WP_155550694.1 PP0621 family protein -
  KN217_RS17355 (KN217_17285) pilS 3576470..3578062 (+) 1593 WP_008569736.1 PAS domain-containing sensor histidine kinase Regulator
  KN217_RS17360 (KN217_17290) pilR 3578184..3579524 (+) 1341 WP_301619161.1 sigma-54 dependent transcriptional regulator Regulator
  KN217_RS17365 (KN217_17295) - 3579582..3580640 (-) 1059 WP_008569734.1 DUF2333 family protein -
  KN217_RS17370 (KN217_17300) - 3580859..3582454 (+) 1596 WP_155550696.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58633.69 Da        Isoelectric Point: 8.1805

>NTDB_id=574823 KN217_RS17355 WP_008569736.1 3576470..3578062(+) (pilS) [Stutzerimonas stutzeri strain DN36]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHDSLLQMSNPALFSNGAWLYLILNIIVSVLVQNPKRDLPVL
GLALMDVILLSGLFYFAGGTPSGIGNLLIVAVAIANILLRGRVGFFVAAVAAIGLIYLTFYLSLSKPEAARQFVQAAALG
TLCFAAALLVQGLTRRLQASEHLARQRAEDVANLEALNALILQRMRTGILVLDPQRQVLLANQGAQQLLEQPETGGMPLA
EYCPDLLNRLQQWQSNPTLRPEPLKIGQSGPIVQPSFASLQHGEKRNTLVFLEDSSHIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESESLDAADRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSELRNTLAPQ
QSVHLEVIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGLRHARAQVWLRLYRDPASDLPVVEVLDDGDGVAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFHIVFAHASKTG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=574823 KN217_RS17355 WP_008569736.1 3576470..3578062(+) (pilS) [Stutzerimonas stutzeri strain DN36]
GTGGGCACTGAGAACCTGGCCTTCCTGGGCGACCAGGGCCGGCGCATCCTGCGGCTGTATCATCTTTATCGCCTGACCAT
CGGCCTGGCGCTGGTGCTGCTGATCAGCAGCGATCTGCACGACAGCCTGTTGCAGATGAGCAATCCGGCGCTGTTCAGCA
ACGGCGCCTGGCTCTACCTGATCCTCAACATCATCGTGTCCGTGCTGGTGCAGAACCCGAAACGGGATCTGCCGGTGCTG
GGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGGCTGTTCTACTTCGCCGGCGGCACCCCCAGTGGCATCGGCAATCT
GCTGATCGTCGCCGTGGCCATCGCCAACATTCTGCTGCGCGGACGGGTCGGCTTCTTCGTCGCCGCGGTCGCGGCAATCG
GTCTGATCTATCTGACCTTCTATCTCAGCCTGAGCAAGCCGGAAGCCGCGCGCCAGTTCGTCCAGGCCGCAGCGCTGGGC
ACCCTGTGCTTTGCCGCCGCGCTGCTGGTGCAGGGCTTGACCCGCCGCCTGCAGGCCAGCGAACACCTGGCGCGTCAGCG
GGCCGAGGATGTCGCCAACCTGGAAGCATTGAACGCGCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTACTCGATC
CGCAACGACAGGTGCTGCTGGCCAATCAGGGCGCGCAACAGCTGCTCGAGCAACCGGAGACCGGCGGGATGCCGCTCGCC
GAATACTGCCCGGACCTGCTGAATCGCCTGCAGCAATGGCAAAGCAACCCGACCCTGCGCCCGGAGCCGCTGAAGATCGG
CCAGAGCGGCCCGATCGTGCAGCCGAGTTTCGCCTCGCTGCAGCACGGCGAGAAACGCAACACGCTGGTGTTTCTCGAGG
ACAGCTCGCACATCGCGCAGAAGGCCCAGCAGCTCAAGCTCGCCTCGCTCGGCCGACTGACCGCCAGCATCGCCCACGAA
ATTCGCAACCCGCTTGGTGCCATCAGCCACGCGGCACAGCTGCTGCACGAATCCGAATCCTTGGATGCTGCGGACCGGCG
TCTGGCGCAGATCATCCAGGATCATTCGCGACGCATGAACCTGGTCATCGAGAACGTCCTGCAGCTCTCACGCCGACGCC
AGGCCGAACCGCAGCTACTGGATCTCAAGTACTGGCTGCACCGCTTCGTCAGCGAGCTGCGCAACACCCTGGCACCGCAG
CAGAGCGTGCACCTGGAAGTCATCGGCAGCTCCCTGCAGACACGCATGGACCCCAACCAGCTCACCCAGGTGCTGACCAA
CCTCGTGCAGAACGGCCTGCGCTACAGCGGCTTGCGCCATGCGCGCGCCCAGGTATGGTTGCGCCTGTATCGCGACCCGG
CCAGCGACCTGCCGGTGGTTGAAGTCCTCGACGATGGCGACGGAGTGGCCGCCGAGCAGCTGCAGAATATTTTCGAACCC
TTCTTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGATTACCGCGAGCGCCCGGAGGGTGGCAGCTGCTTTCATATCGTCTTTGCGCATGCGAGCAAGACCGGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.773

99.623

0.645