Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG69_RS02810 Genome accession   NZ_CP094096
Coordinates   586780..587331 (+) Length   183 a.a.
NCBI ID   WP_245056443.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581780..592331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS02795 (MPG69_02795) cysS 581961..583358 (-) 1398 WP_245056436.1 cysteine--tRNA ligase -
  MPG69_RS02800 (MPG69_02800) murJ 583359..584819 (-) 1461 WP_245056438.1 murein biosynthesis integral membrane protein MurJ -
  MPG69_RS02805 (MPG69_02805) - 584912..586756 (+) 1845 WP_245056440.1 hypothetical protein -
  MPG69_RS02810 (MPG69_02810) ruvA 586780..587331 (+) 552 WP_245056443.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG69_RS02815 (MPG69_02815) - 587382..589854 (+) 2473 Protein_536 DUF3519 domain-containing protein -
  MPG69_RS02820 (MPG69_02820) - 590394..591119 (-) 726 WP_245056445.1 NYN domain-containing protein -
  MPG69_RS02825 (MPG69_02825) ruvC 591249..591722 (+) 474 WP_245056447.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20220.84 Da        Isoelectric Point: 9.4311

>NTDB_id=574753 MPG69_RS02810 WP_245056443.1 586780..587331(+) (ruvA) [Helicobacter pylori strain Hpfe082]
MIVGLIGVVEKISALEAHIEVQGVVYGVQISMRTSALLQAGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574753 MPG69_RS02810 WP_245056443.1 586780..587331(+) (ruvA) [Helicobacter pylori strain Hpfe082]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAATTTCTATGCGGACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGTGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTTAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAACTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCTTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366