Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   KNN15_RS04155 Genome accession   NZ_CP076325
Coordinates   748103..750172 (+) Length   689 a.a.
NCBI ID   WP_273106722.1    Uniprot ID   -
Organism   MAG: Thermus antranikianii isolate RBS10-92     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743103..755172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN15_RS04115 (KNN15_04065) - 743125..743580 (+) 456 WP_273106707.1 hypothetical protein -
  KNN15_RS04120 (KNN15_04070) pfkA 743608..744576 (-) 969 WP_273106710.1 6-phosphofructokinase -
  KNN15_RS04125 (KNN15_04075) rsmI 744573..745385 (-) 813 WP_273106713.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KNN15_RS04130 (KNN15_04080) - 745387..745884 (-) 498 WP_028493662.1 hypothetical protein -
  KNN15_RS04135 (KNN15_04085) - 745970..746500 (-) 531 WP_028493661.1 inorganic diphosphatase -
  KNN15_RS04140 (KNN15_04090) - 746511..747161 (-) 651 WP_028493660.1 glycerophosphodiester phosphodiesterase -
  KNN15_RS04145 (KNN15_04095) - 747185..747835 (+) 651 WP_028493659.1 YcxB family protein -
  KNN15_RS04150 (KNN15_04100) comEA 747808..748116 (+) 309 WP_028493658.1 ComEA family DNA-binding protein Machinery gene
  KNN15_RS04155 (KNN15_04105) comA/comEC 748103..750172 (+) 2070 WP_273106722.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KNN15_RS04160 (KNN15_04110) - 750160..750972 (-) 813 WP_273106724.1 ParB/RepB/Spo0J family partition protein -
  KNN15_RS04165 (KNN15_04115) soj 750956..751708 (-) 753 WP_028493655.1 chromosome-partitioning ATPase Soj -
  KNN15_RS04170 (KNN15_04120) rsmG 751702..752430 (-) 729 WP_028493654.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KNN15_RS04175 (KNN15_04125) mnmG 752465..754258 (-) 1794 WP_028493653.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 74019.85 Da        Isoelectric Point: 10.5387

>NTDB_id=574675 KNN15_RS04155 WP_273106722.1 748103..750172(+) (comA/comEC) [MAG: Thermus antranikianii isolate RBS10-92]
MSGPRAVFPKPLLSTWGPGVGLGLGGLLGAWGLFHPWVLLLAPFLLPLLRLPFALGLVLVLLRGLLFPVPEPPYGTRLEG
VFTLHQGTILWQGHRLWVQHYPGLEDGRYRLRGYLAPPQGKRNPGGFDQRTWLLSRGIRGVFHVERAEPLAPLPDPRAPF
RARLAQGLSPPALEVLEGLVLGDKRELEDTYTQFQKAGLAHLLALSGLHVGFLVASLVFLLTPLGRWRYLLALLALPFYL
WLAGPSPSLVRASLMAGLSLLGLFLGLGAAGVLQALGLALFLQLLWWPASLLSLSLQLSYLAVAGIALLLPALPRPQGAR
GYLTGALLTSLAAQVPLVPLLLHRFGFLPLLSPLSNLLALPLASLLVPLGFLKLFLGDLLAPLLEPMARALLLLAQAASH
GPLLSWGEISPLGFALYYLGLFPLALALHRLLPWRKALLLASLPLLASLLASWPKPLDLFALDVGQGDALLARLGGAEVL
VDGGRPEQGEKVVRALRALGVEALEVLVATHPDADHHGGLLKVAEEVPIGLALLSPAFPKEHPLVQALQSRKVPILFPGT
GTRLRVGKGSLEVLWPPGPQADDNQSGLVLLLDFAGPKALLLADVPAEVEKRLSPPRVAVVKVSHHGSRTSTEAGLLERA
RPQVALIGVGRNPHGHPHPEVLKRLAHHGVKVYRTDQNGAVRVLFGYAW

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=574675 KNN15_RS04155 WP_273106722.1 748103..750172(+) (comA/comEC) [MAG: Thermus antranikianii isolate RBS10-92]
ATGTCCGGCCCTAGGGCAGTCTTCCCCAAGCCTCTCCTCTCCACCTGGGGTCCAGGGGTGGGCCTGGGTCTAGGCGGGCT
CCTGGGAGCCTGGGGACTTTTCCATCCCTGGGTCCTTCTCCTAGCGCCCTTCCTCCTCCCCCTCCTCCGGCTTCCCTTCG
CCCTTGGGCTCGTTCTGGTCCTCCTCCGGGGCCTCCTCTTCCCCGTACCGGAACCCCCTTACGGCACCCGCCTCGAGGGT
GTCTTCACCCTCCACCAAGGCACGATCCTCTGGCAGGGACACAGGCTTTGGGTGCAGCACTACCCGGGCCTGGAGGATGG
CCGCTACCGGCTGCGGGGGTACCTGGCTCCACCCCAGGGCAAGCGCAACCCCGGGGGCTTTGACCAGCGCACCTGGCTCC
TCTCCCGGGGGATAAGGGGGGTGTTTCACGTGGAACGGGCGGAACCCCTGGCTCCGCTTCCCGATCCTCGGGCTCCCTTC
CGTGCCCGCCTGGCGCAGGGGCTCTCGCCCCCTGCCCTCGAGGTCCTGGAGGGGCTGGTCCTGGGGGATAAAAGGGAACT
GGAGGACACCTATACCCAGTTTCAAAAGGCAGGGCTCGCCCATCTTCTGGCCCTCTCGGGCCTCCACGTGGGCTTTCTGG
TGGCAAGCCTGGTTTTCCTTCTTACCCCTTTGGGCCGATGGCGCTACCTCCTGGCCCTCCTCGCTCTACCCTTTTACCTC
TGGCTGGCGGGGCCAAGCCCCTCCTTGGTGCGGGCCAGCCTCATGGCTGGGTTATCCCTCCTGGGCCTCTTCCTGGGCCT
TGGAGCCGCCGGGGTGCTCCAGGCCCTGGGCCTCGCCCTCTTTCTCCAGCTCCTGTGGTGGCCCGCAAGCCTGCTAAGCC
TTTCCCTCCAGCTCTCCTACCTGGCGGTTGCGGGGATCGCCCTCCTTCTGCCCGCCCTTCCCCGACCCCAGGGGGCACGG
GGGTACCTAACTGGAGCCCTTCTCACCAGCCTGGCAGCCCAGGTCCCCCTGGTTCCCCTTCTCCTTCACCGCTTCGGCTT
CCTACCCCTTCTCTCCCCCCTCAGCAACCTCCTGGCCCTGCCCCTGGCCTCCCTCTTGGTACCCCTGGGATTCCTCAAGC
TCTTCCTTGGGGATCTTCTGGCACCCCTTCTGGAGCCCATGGCCCGGGCCCTCCTCCTCCTGGCCCAGGCCGCAAGCCAC
GGCCCACTCCTAAGCTGGGGGGAAATCTCCCCTTTGGGTTTCGCCCTCTACTACCTTGGGCTTTTCCCCTTGGCCCTGGC
CCTGCACCGGCTTCTCCCCTGGCGGAAAGCCCTCCTCCTTGCCAGCCTTCCCCTTCTGGCCAGCCTCCTTGCCTCCTGGC
CCAAGCCCCTGGACCTCTTTGCCCTGGACGTAGGCCAGGGGGATGCCCTGCTGGCCCGGCTGGGTGGGGCCGAGGTGCTG
GTGGACGGGGGCCGGCCCGAGCAGGGGGAAAAGGTGGTGCGGGCCCTAAGGGCCCTGGGGGTGGAGGCCCTCGAGGTCCT
GGTGGCCACCCACCCCGATGCCGACCATCACGGAGGCCTCCTTAAGGTGGCCGAGGAGGTTCCCATCGGCCTCGCTCTCC
TCTCCCCCGCCTTCCCAAAGGAGCACCCCCTGGTCCAGGCCCTGCAAAGCCGGAAGGTGCCCATCCTCTTCCCCGGAACC
GGTACCCGGCTTCGCGTGGGAAAAGGGAGCCTCGAGGTCCTCTGGCCCCCTGGCCCGCAAGCAGACGACAACCAAAGCGG
CCTGGTCCTCCTCCTGGACTTCGCCGGGCCCAAGGCCCTCCTCCTGGCCGATGTACCCGCGGAGGTGGAGAAAAGGCTAA
GCCCCCCACGGGTGGCCGTGGTTAAGGTGAGCCACCACGGCTCCCGCACGAGCACGGAAGCCGGTCTCCTGGAACGCGCC
CGGCCCCAGGTGGCCTTAATAGGCGTGGGAAGGAACCCCCATGGCCACCCCCACCCCGAGGTCTTGAAGCGCCTGGCCCA
CCATGGGGTAAAGGTCTACCGCACCGACCAAAACGGCGCGGTGCGGGTCCTTTTTGGCTACGCCTGGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(179-430)

Domain of unknown function (DUF4131) (DUF4131)

(108-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(463-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

69.778

97.968

0.684