Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KNN15_RS04150 Genome accession   NZ_CP076325
Coordinates   747808..748116 (+) Length   102 a.a.
NCBI ID   WP_028493658.1    Uniprot ID   A0A430RD44
Organism   MAG: Thermus antranikianii isolate RBS10-92     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 742808..753116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN15_RS04115 (KNN15_04065) - 743125..743580 (+) 456 WP_273106707.1 hypothetical protein -
  KNN15_RS04120 (KNN15_04070) pfkA 743608..744576 (-) 969 WP_273106710.1 6-phosphofructokinase -
  KNN15_RS04125 (KNN15_04075) rsmI 744573..745385 (-) 813 WP_273106713.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KNN15_RS04130 (KNN15_04080) - 745387..745884 (-) 498 WP_028493662.1 hypothetical protein -
  KNN15_RS04135 (KNN15_04085) - 745970..746500 (-) 531 WP_028493661.1 inorganic diphosphatase -
  KNN15_RS04140 (KNN15_04090) - 746511..747161 (-) 651 WP_028493660.1 glycerophosphodiester phosphodiesterase -
  KNN15_RS04145 (KNN15_04095) - 747185..747835 (+) 651 WP_028493659.1 YcxB family protein -
  KNN15_RS04150 (KNN15_04100) comEA 747808..748116 (+) 309 WP_028493658.1 ComEA family DNA-binding protein Machinery gene
  KNN15_RS04155 (KNN15_04105) comA/comEC 748103..750172 (+) 2070 WP_273106722.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KNN15_RS04160 (KNN15_04110) - 750160..750972 (-) 813 WP_273106724.1 ParB/RepB/Spo0J family partition protein -
  KNN15_RS04165 (KNN15_04115) soj 750956..751708 (-) 753 WP_028493655.1 chromosome-partitioning ATPase Soj -
  KNN15_RS04170 (KNN15_04120) rsmG 751702..752430 (-) 729 WP_028493654.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11308.46 Da        Isoelectric Point: 8.5051

>NTDB_id=574674 KNN15_RS04150 WP_028493658.1 747808..748116(+) (comEA) [MAG: Thermus antranikianii isolate RBS10-92]
MVFLYLLAVALLGLFNLWPKLAPKPQPVRVEVLAEASFEPPAPEPISLNQATLEELMTLPGVGPVLAQRIVEGRPYTRVE
DLLRVKGIGPATLERLRPYVRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=574674 KNN15_RS04150 WP_028493658.1 747808..748116(+) (comEA) [MAG: Thermus antranikianii isolate RBS10-92]
GTGGTTTTCCTCTACCTCCTCGCGGTAGCCCTCCTGGGTCTTTTCAACCTTTGGCCCAAGCTGGCCCCCAAACCCCAACC
GGTGCGGGTGGAAGTCCTGGCGGAGGCCAGCTTCGAGCCCCCAGCCCCCGAACCCATCAGCTTGAACCAAGCCACCCTCG
AGGAACTCATGACCCTCCCTGGGGTCGGCCCCGTGCTGGCCCAGAGGATCGTGGAGGGAAGACCCTACACCCGGGTGGAG
GACCTCCTGAGGGTCAAGGGCATCGGCCCCGCCACCCTGGAACGGCTCAGGCCCTATGTCCGGCCCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430RD44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

75.49

100

0.755
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.741

100

0.431