Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG19_RS01250 Genome accession   NZ_CP094094
Coordinates   266520..266786 (+) Length   88 a.a.
NCBI ID   WP_180506138.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe084     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 261520..271786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS07945 - 263578..264356 (+) 779 Protein_242 hypothetical protein -
  MPG19_RS01235 (MPG19_01235) - 264376..264666 (+) 291 WP_245066438.1 hypothetical protein -
  MPG19_RS01240 (MPG19_01240) - 264673..265998 (+) 1326 WP_245066442.1 toprim domain-containing protein -
  MPG19_RS01245 (MPG19_01245) - 266244..266519 (+) 276 WP_021308999.1 hypothetical protein -
  MPG19_RS01250 (MPG19_01250) comB3 266520..266786 (+) 267 WP_180506138.1 virB3 type IV secretion protein Machinery gene
  MPG19_RS07950 - 266833..269202 (+) 2370 Protein_247 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG19_RS07955 (MPG19_01270) - 269205..270835 (+) 1631 Protein_248 type IA DNA topoisomerase -
  MPG19_RS01275 (MPG19_01275) - 270798..270986 (-) 189 Protein_249 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10177.01 Da        Isoelectric Point: 4.8782

>NTDB_id=574667 MPG19_RS01250 WP_180506138.1 266520..266786(+) (comB3) [Helicobacter pylori strain Hpfe084]
MALHIICVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=574667 MPG19_RS01250 WP_180506138.1 266520..266786(+) (comB3) [Helicobacter pylori strain Hpfe084]
ATGGCATTGCATATTATTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GCTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398