Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KNN15_RS01915 Genome accession   NZ_CP076325
Coordinates   360057..361190 (+) Length   377 a.a.
NCBI ID   WP_273105946.1    Uniprot ID   -
Organism   MAG: Thermus antranikianii isolate RBS10-92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355057..366190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN15_RS01885 (KNN15_01860) - 355580..355945 (-) 366 WP_273105938.1 hypothetical protein -
  KNN15_RS01900 (KNN15_01875) - 356831..358246 (+) 1416 WP_273105940.1 HD-GYP domain-containing protein -
  KNN15_RS01905 (KNN15_01880) - 358282..358791 (+) 510 WP_273107703.1 DUF5317 domain-containing protein -
  KNN15_RS01910 (KNN15_01885) - 358861..359865 (+) 1005 WP_273105943.1 homoisocitrate dehydrogenase -
  KNN15_RS01915 (KNN15_01890) pilM 360057..361190 (+) 1134 WP_273105946.1 type IV pilus assembly protein PilM Machinery gene
  KNN15_RS01920 (KNN15_01895) pilN 361183..361806 (+) 624 WP_028493409.1 competence protein Machinery gene
  KNN15_RS01925 (KNN15_01900) pilO 361796..362422 (+) 627 WP_273107705.1 type 4a pilus biogenesis protein PilO Machinery gene
  KNN15_RS01930 (KNN15_01905) pilW 362419..363390 (+) 972 WP_273105950.1 competence protein Machinery gene
  KNN15_RS01935 (KNN15_01910) pilQ 363387..365666 (+) 2280 WP_273105953.1 secretin N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41116.65 Da        Isoelectric Point: 4.4462

>NTDB_id=574667 KNN15_RS01915 WP_273105946.1 360057..361190(+) (pilM) [MAG: Thermus antranikianii isolate RBS10-92]
MLSGFSKLFKPRVEALGLEIGAANLKLVELSGNPPALRALATRPTPPGMLVEGVIAEPQALAQELKELLAEARTKKRYVV
TAVPNPSVILRTLQVPKMPPKEMEEAVRWEAERYIPFPIDEVVLDFAPLDPLAEAAEGEQVEVMVGAARQEAVASLLEAL
RGAGLTPIILDVKPFAGLYPLEAQLSSDPEGVSVAVEIGAESTSLVLLKGNRPLAVRILALSGKDFTEAIGKSFGLDFLT
AEEVKRTYGLATIPTEDEELLLDFDAERERYSPAKIYDAIRPVLVELTQEIRRSLEFFRVQLGDVQPEVGYLYGGGSRLR
GLSTLLTDTLGVNFTVPDPWQGIQVDPKRFDLEKIKEMGPEFLVPVGLALRGVMPLD

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=574667 KNN15_RS01915 WP_273105946.1 360057..361190(+) (pilM) [MAG: Thermus antranikianii isolate RBS10-92]
GTGCTTTCGGGTTTTAGCAAGCTATTCAAACCCCGCGTGGAGGCGCTGGGCCTGGAGATCGGCGCCGCCAACCTAAAACT
GGTGGAACTCTCCGGAAATCCTCCCGCCCTCAGGGCCTTGGCCACCCGGCCCACTCCCCCGGGAATGCTGGTGGAAGGGG
TGATCGCCGAACCCCAGGCCCTGGCCCAGGAACTCAAGGAACTCCTTGCCGAAGCCCGGACCAAAAAGCGCTACGTGGTC
ACCGCCGTACCCAATCCCAGCGTTATCCTGCGCACCCTTCAGGTGCCCAAGATGCCCCCCAAGGAGATGGAGGAGGCGGT
TCGCTGGGAAGCAGAGCGGTATATCCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCTCCCTTGGATCCGTTGGCCG
AGGCCGCCGAAGGGGAACAGGTGGAGGTGATGGTGGGAGCAGCCCGGCAAGAAGCGGTGGCCTCCCTCCTAGAAGCCCTG
CGGGGGGCAGGCCTGACCCCCATCATCCTGGATGTGAAACCCTTTGCCGGGCTTTATCCCCTGGAGGCCCAGCTCAGTAG
CGACCCGGAGGGGGTTTCCGTGGCCGTGGAAATCGGGGCGGAAAGCACCAGCCTGGTCCTCCTTAAGGGAAACCGCCCCT
TGGCGGTGCGGATCCTCGCCCTCTCTGGCAAGGACTTCACCGAAGCCATTGGGAAAAGCTTTGGCCTGGACTTCCTCACC
GCCGAGGAGGTGAAGCGCACCTACGGCCTCGCCACCATCCCCACCGAGGACGAGGAGCTCCTTCTGGATTTTGACGCCGA
GAGGGAGCGGTACAGTCCCGCCAAAATCTACGACGCCATCCGGCCTGTCCTGGTGGAACTCACCCAGGAAATCCGCAGGA
GCCTGGAGTTTTTCCGGGTACAACTGGGGGACGTACAGCCAGAGGTAGGGTACCTTTATGGCGGGGGAAGCCGGCTTAGG
GGCCTGTCCACCCTGCTTACCGATACCCTGGGGGTCAACTTCACCGTCCCCGATCCCTGGCAGGGCATTCAGGTGGATCC
CAAACGCTTTGACCTGGAAAAGATCAAGGAGATGGGACCGGAGTTCCTGGTGCCCGTGGGCTTGGCCTTACGGGGGGTGA
TGCCCCTTGATTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Thermus thermophilus HB27

75.862

100

0.759