Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG15_RS05085 Genome accession   NZ_CP094087
Coordinates   1070434..1071609 (+) Length   391 a.a.
NCBI ID   WP_245079033.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065434..1076609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS05060 (MPG15_05060) - 1065721..1066617 (+) 897 WP_000697549.1 OriC activity response regulator -
  MPG15_RS05065 (MPG15_05065) - 1066843..1067709 (+) 867 WP_245080001.1 5'-3' exonuclease -
  MPG15_RS05070 (MPG15_05070) - 1067772..1069022 (-) 1251 WP_245079030.1 outer membrane family protein -
  MPG15_RS05075 (MPG15_05075) - 1069190..1070056 (+) 867 WP_245079031.1 DnaJ C-terminal domain-containing protein -
  MPG15_RS05080 (MPG15_05080) - 1070066..1070437 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG15_RS05085 (MPG15_05085) rarA 1070434..1071609 (+) 1176 WP_245079033.1 replication-associated recombination protein A Machinery gene
  MPG15_RS05090 (MPG15_05090) fur 1071770..1072222 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG15_RS05095 (MPG15_05095) - 1072242..1072739 (-) 498 WP_000780295.1 DUF2147 domain-containing protein -
  MPG15_RS05100 (MPG15_05100) - 1072736..1073272 (-) 537 WP_245079035.1 YhcH/YjgK/YiaL family protein -
  MPG15_RS05105 (MPG15_05105) fliY 1073301..1074164 (-) 864 WP_245079036.1 flagellar motor switch protein FliY -
  MPG15_RS05110 (MPG15_05110) fliM 1074168..1075232 (-) 1065 WP_000763603.1 flagellar motor switch protein FliM -
  MPG15_RS05115 (MPG15_05115) - 1075225..1076001 (-) 777 WP_120944651.1 RNA polymerase sigma factor FliA -
  MPG15_RS05120 (MPG15_05120) - 1075979..1076293 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43996.58 Da        Isoelectric Point: 7.8110

>NTDB_id=574440 MPG15_RS05085 WP_245079033.1 1070434..1071609(+) (rarA) [Helicobacter pylori strain Hpfe093]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTWLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=574440 MPG15_RS05085 WP_245079033.1 1070434..1071609(+) (rarA) [Helicobacter pylori strain Hpfe093]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCTCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAACCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391