Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KM776_RS01990 Genome accession   NZ_CP076290
Coordinates   424825..425778 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain Q12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419825..430778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM776_RS01965 (KM776_01965) - 419869..421302 (+) 1434 WP_161620115.1 HAMP domain-containing sensor histidine kinase -
  KM776_RS01970 (KM776_01970) rapC 421455..422603 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  KM776_RS01975 (KM776_01975) phrC 422587..422706 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KM776_RS01980 (KM776_01980) - 422856..422951 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  KM776_RS01985 (KM776_01985) - 423046..424410 (-) 1365 WP_003156333.1 aspartate kinase -
  KM776_RS01990 (KM776_01990) ceuB 424825..425778 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  KM776_RS01995 (KM776_01995) - 425768..426715 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  KM776_RS02000 (KM776_02000) - 426709..427467 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  KM776_RS02005 (KM776_02005) - 427489..428433 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  KM776_RS02010 (KM776_02010) - 428475..429899 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=574440 KM776_RS01990 WP_003156332.1 424825..425778(+) (ceuB) [Bacillus velezensis strain Q12]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=574440 KM776_RS01990 WP_003156332.1 424825..425778(+) (ceuB) [Bacillus velezensis strain Q12]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533