Detailed information NTG0574438

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: KM776_RS01970
• Genome accession: NZ_CP076290
• Coordinates: 421455..422603 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Q12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 416455..427603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KM776_RS01950 (KM776_01950)	-	416852..417535 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
KM776_RS01955 (KM776_01955)	-	417550..418986 (-)	1437	WP_069013096.1	ABC transporter permease	-
KM776_RS01960 (KM776_01960)	-	419199..419882 (+)	684	WP_024084885.1	response regulator transcription factor	-
KM776_RS01965 (KM776_01965)	-	419869..421302 (+)	1434	WP_161620115.1	HAMP domain-containing sensor histidine kinase	-
KM776_RS01970 (KM776_01970)	rapC	421455..422603 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
KM776_RS01975 (KM776_01975)	phrC	422587..422706 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
KM776_RS01980 (KM776_01980)	-	422856..422951 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
KM776_RS01985 (KM776_01985)	-	423046..424410 (-)	1365	WP_003156333.1	aspartate kinase	-
KM776_RS01990 (KM776_01990)	ceuB	424825..425778 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
KM776_RS01995 (KM776_01995)	-	425768..426715 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
KM776_RS02000 (KM776_02000)	-	426709..427467 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=574438 KM776_RS01970 WP_003156336.1 421455..422603(+) (rapC) [Bacillus velezensis strain Q12]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=574438 KM776_RS01970 WP_003156336.1 421455..422603(+) (rapC) [Bacillus velezensis strain Q12]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568