Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KM146_RS22210 Genome accession   NZ_CP076287
Coordinates   3078533..3079258 (-) Length   241 a.a.
NCBI ID   WP_065275014.1    Uniprot ID   A0AA92LR36
Organism   Vibrio alginolyticus strain ZJ-0     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3073533..3084258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS22185 (KM146_22180) - 3074675..3075166 (+) 492 WP_005383002.1 type II secretion system protein M -
  KM146_RS22190 (KM146_22185) - 3075168..3075929 (+) 762 WP_017635007.1 type II secretion system protein N -
  KM146_RS22195 (KM146_22190) cysQ 3076233..3077060 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KM146_RS22200 (KM146_22195) nudE 3077105..3077674 (-) 570 WP_065275013.1 ADP compounds hydrolase NudE -
  KM146_RS22205 (KM146_22200) nfuA 3077851..3078435 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  KM146_RS22210 (KM146_22205) comF 3078533..3079258 (-) 726 WP_065275014.1 phosphoribosyltransferase family protein Machinery gene
  KM146_RS22215 (KM146_22210) bioH 3079343..3080110 (+) 768 WP_021707605.1 pimeloyl-ACP methyl ester esterase BioH -
  KM146_RS22220 (KM146_22215) - 3080235..3080699 (+) 465 WP_005379316.1 hypothetical protein -
  KM146_RS22225 (KM146_22220) - 3080804..3083125 (-) 2322 WP_005379317.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27747.02 Da        Isoelectric Point: 9.3977

>NTDB_id=574427 KM146_RS22210 WP_065275014.1 3078533..3079258(-) (comF) [Vibrio alginolyticus strain ZJ-0]
MLSHHWQNIMHRVLSSQCGLCRLPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLALRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=574427 KM146_RS22210 WP_065275014.1 3078533..3079258(-) (comF) [Vibrio alginolyticus strain ZJ-0]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTATTGAGCAGTCAATGCGGCCTGTGTCGGCTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCAGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACTGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477