Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KM146_RS19710 Genome accession   NZ_CP076287
Coordinates   2549154..2549669 (-) Length   171 a.a.
NCBI ID   WP_065274915.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZJ-0     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2544154..2554669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS19695 (KM146_19690) aroB 2545544..2546644 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  KM146_RS19700 (KM146_19695) aroK 2546677..2547195 (-) 519 WP_005381319.1 shikimate kinase AroK -
  KM146_RS19705 (KM146_19700) pilQ 2547383..2549128 (-) 1746 WP_005382765.1 type IV pilus secretin PilQ Machinery gene
  KM146_RS19710 (KM146_19705) pilP 2549154..2549669 (-) 516 WP_065274915.1 pilus assembly protein PilP Machinery gene
  KM146_RS19715 (KM146_19710) pilO 2549659..2550252 (-) 594 WP_042523672.1 type 4a pilus biogenesis protein PilO Machinery gene
  KM146_RS19720 (KM146_19715) pilN 2550245..2550820 (-) 576 WP_054577259.1 PilN domain-containing protein Machinery gene
  KM146_RS19725 (KM146_19720) pilM 2550804..2551820 (-) 1017 WP_017821733.1 type IV pilus biogenesis protein PilM Machinery gene
  KM146_RS19730 (KM146_19725) - 2551965..2554526 (+) 2562 WP_065274916.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19050.23 Da        Isoelectric Point: 10.3600

>NTDB_id=574418 KM146_RS19710 WP_065274915.1 2549154..2549669(-) (pilP) [Vibrio alginolyticus strain ZJ-0]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRIVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=574418 KM146_RS19710 WP_065274915.1 2549154..2549669(-) (pilP) [Vibrio alginolyticus strain ZJ-0]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACTATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGTAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTTGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTATAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.211

100

0.842
  pilP Vibrio cholerae strain A1552

56.977

100

0.573