Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KHF85_RS14775 Genome accession   NZ_CP076255
Coordinates   3408749..3410137 (+) Length   462 a.a.
NCBI ID   WP_284567235.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. graminis strain NCPPB 3711     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3383371..3411122 3408749..3410137 within 0


Gene organization within MGE regions


Location: 3383371..3411122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHF85_RS14655 (KHF85_14585) - 3383371..3384327 (-) 957 WP_009597007.1 IS30 family transposase -
  KHF85_RS14660 (KHF85_14590) - 3384407..3384865 (+) 459 WP_284569625.1 transposase -
  KHF85_RS14665 (KHF85_14595) - 3384822..3385136 (-) 315 WP_284567224.1 VirB8/TrbF family protein -
  KHF85_RS14670 (KHF85_14600) - 3385142..3386104 (-) 963 WP_345782165.1 type IV secretion system protein -
  KHF85_RS14675 - 3386086..3386250 (+) 165 Protein_2888 avirulence protein -
  KHF85_RS14680 (KHF85_14605) - 3386303..3386401 (-) 99 Protein_2889 recombinase family protein -
  KHF85_RS14685 (KHF85_14610) - 3386694..3387170 (+) 477 WP_284567226.1 NYN domain-containing protein -
  KHF85_RS14690 (KHF85_14615) - 3387598..3387753 (-) 156 Protein_2891 SulP family inorganic anion transporter -
  KHF85_RS14695 (KHF85_14620) - 3387993..3389033 (+) 1041 WP_074059012.1 acyltransferase family protein -
  KHF85_RS14700 (KHF85_14625) - 3389142..3390098 (-) 957 WP_009597007.1 IS30 family transposase -
  KHF85_RS14705 (KHF85_14630) - 3390263..3391858 (+) 1596 WP_139310055.1 hypothetical protein -
  KHF85_RS20675 (KHF85_14635) - 3392037..3392237 (+) 201 Protein_2895 integrase -
  KHF85_RS14710 - 3392296..3392421 (+) 126 WP_284569616.1 hypothetical protein -
  KHF85_RS14715 (KHF85_14640) - 3392478..3393215 (+) 738 WP_284567227.1 ATP-binding cassette domain-containing protein -
  KHF85_RS14720 (KHF85_14645) - 3393224..3394711 (+) 1488 WP_284569565.1 glycine betaine ABC transporter substrate-binding protein -
  KHF85_RS14725 (KHF85_14650) - 3395454..3396653 (-) 1200 WP_284567228.1 aminotransferase class V-fold PLP-dependent enzyme -
  KHF85_RS14730 (KHF85_14655) egtB 3396808..3398097 (+) 1290 WP_284567229.1 ergothioneine biosynthesis protein EgtB -
  KHF85_RS14735 (KHF85_14660) egtD 3398094..3399077 (+) 984 WP_284567230.1 L-histidine N(alpha)-methyltransferase -
  KHF85_RS14740 (KHF85_14665) - 3399247..3399447 (-) 201 Protein_2902 NAD+ synthase -
  KHF85_RS14745 (KHF85_14670) - 3399613..3401250 (-) 1638 WP_284567231.1 NAD+ synthase -
  KHF85_RS14750 (KHF85_14675) - 3401679..3403565 (+) 1887 WP_284567232.1 hypothetical protein -
  KHF85_RS14755 (KHF85_14680) - 3403806..3404045 (-) 240 WP_284567233.1 hypothetical protein -
  KHF85_RS14760 (KHF85_14685) sucD 3404759..3405631 (-) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  KHF85_RS14765 (KHF85_14690) sucC 3405655..3406818 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  KHF85_RS14770 (KHF85_14695) - 3407061..3408674 (+) 1614 WP_284567234.1 sensor histidine kinase -
  KHF85_RS14775 (KHF85_14700) pilR 3408749..3410137 (+) 1389 WP_284567235.1 sigma-54-dependent transcriptional regulator Regulator
  KHF85_RS14780 (KHF85_14705) - 3410326..3410508 (+) 183 WP_003477093.1 YhfG family protein -
  KHF85_RS14785 (KHF85_14710) - 3410505..3411122 (+) 618 WP_284567236.1 Fic/DOC family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49741.17 Da        Isoelectric Point: 6.7306

>NTDB_id=574101 KHF85_RS14775 WP_284567235.1 3408749..3410137(+) (pilR) [Xanthomonas translucens pv. graminis strain NCPPB 3711]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGVSAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDAQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=574101 KHF85_RS14775 WP_284567235.1 3408749..3410137(+) (pilR) [Xanthomonas translucens pv. graminis strain NCPPB 3711]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGTCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCATGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGCCCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472