Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG31_RS01500 Genome accession   NZ_CP094074
Coordinates   292651..293700 (-) Length   349 a.a.
NCBI ID   WP_245015431.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 287651..298700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS01480 (MPG31_01480) rpsL 288574..288981 (+) 408 WP_127989717.1 30S ribosomal protein S12 -
  MPG31_RS01485 (MPG31_01485) rpsG 288997..289464 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG31_RS01490 (MPG31_01490) fusA 289476..291554 (+) 2079 WP_000101828.1 elongation factor G -
  MPG31_RS01495 (MPG31_01495) - 292083..292463 (+) 381 WP_000744161.1 hypothetical protein -
  MPG31_RS01500 (MPG31_01500) waaF 292651..293700 (-) 1050 WP_245015431.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG31_RS01505 (MPG31_01505) hisS 293762..295090 (+) 1329 WP_245015432.1 histidine--tRNA ligase -
  MPG31_RS01510 (MPG31_01510) asd 295077..296117 (+) 1041 WP_245015433.1 aspartate-semialdehyde dehydrogenase -
  MPG31_RS01515 (MPG31_01515) - 296304..298125 (-) 1822 Protein_292 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39614.41 Da        Isoelectric Point: 9.4740

>NTDB_id=574101 MPG31_RS01500 WP_245015431.1 292651..293700(-) (waaF) [Helicobacter pylori strain Hpfe103]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIEHIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574101 MPG31_RS01500 WP_245015431.1 292651..293700(-) (waaF) [Helicobacter pylori strain Hpfe103]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCCCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGACATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGCACATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCTACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367