Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KFS83_RS15025 Genome accession   NZ_CP076248
Coordinates   3459428..3460816 (+) Length   462 a.a.
NCBI ID   WP_058360092.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. hordei strain UPB947     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3454428..3465816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFS83_RS15010 (KFS83_14910) sucD 3455440..3456312 (-) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  KFS83_RS15015 (KFS83_14915) sucC 3456336..3457499 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  KFS83_RS15020 (KFS83_14920) - 3457740..3459353 (+) 1614 WP_003477089.1 ATP-binding protein -
  KFS83_RS15025 (KFS83_14925) pilR 3459428..3460816 (+) 1389 WP_058360092.1 sigma-54 dependent transcriptional regulator Regulator
  KFS83_RS15030 (KFS83_14930) - 3461005..3461187 (+) 183 WP_003477093.1 YhfG family protein -
  KFS83_RS15035 (KFS83_14935) - 3461184..3461801 (+) 618 WP_003477095.1 Fic family protein -
  KFS83_RS15040 (KFS83_14940) pilB 3461811..3463547 (-) 1737 WP_058360091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KFS83_RS15045 (KFS83_14945) - 3463774..3464178 (+) 405 WP_128809131.1 hypothetical protein -
  KFS83_RS15050 (KFS83_14950) pilA 3464270..3464686 (-) 417 WP_128809130.1 pilin Machinery gene

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49859.26 Da        Isoelectric Point: 6.5828

>NTDB_id=573998 KFS83_RS15025 WP_058360092.1 3459428..3460816(+) (pilR) [Xanthomonas translucens pv. hordei strain UPB947]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLATAILTRLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=573998 KFS83_RS15025 WP_058360092.1 3459428..3460816(+) (pilR) [Xanthomonas translucens pv. hordei strain UPB947]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGTTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTCGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGATGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCACGGCGATCCTGACACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCCGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472