Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPATCC43504_RS00280 | Genome accession | NZ_AP017632 |
| Coordinates | 62675..63250 (+) | Length | 191 a.a. |
| NCBI ID | WP_108169446.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ATCC 43504 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57675..68250
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPATCC43504_RS00255 (HPATCC43504_00053) | uvrD | 58366..60411 (+) | 2046 | WP_162296836.1 | DNA helicase UvrD | - |
| HPATCC43504_RS00260 (HPATCC43504_00054) | flgA | 60408..61064 (+) | 657 | WP_108169443.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPATCC43504_RS00265 (HPATCC43504_00055) | - | 61074..61637 (+) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| HPATCC43504_RS00270 (HPATCC43504_00056) | coaD | 61637..62110 (+) | 474 | WP_108169444.1 | pantetheine-phosphate adenylyltransferase | - |
| HPATCC43504_RS00275 (HPATCC43504_00057) | tmk | 62112..62687 (+) | 576 | WP_108169445.1 | dTMP kinase | - |
| HPATCC43504_RS00280 (HPATCC43504_00058) | comFC | 62675..63250 (+) | 576 | WP_108169446.1 | ComF family protein | Machinery gene |
| HPATCC43504_RS00285 (HPATCC43504_00059) | - | 63283..65322 (+) | 2040 | WP_108169963.1 | N-6 DNA methylase | - |
| HPATCC43504_RS00290 (HPATCC43504_00060) | - | 65319..66512 (+) | 1194 | WP_108169447.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21310.80 Da Isoelectric Point: 8.4503
>NTDB_id=57382 HPATCC43504_RS00280 WP_108169446.1 62675..63250(+) (comFC) [Helicobacter pylori strain ATCC 43504]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=57382 HPATCC43504_RS00280 WP_108169446.1 62675..63250(+) (comFC) [Helicobacter pylori strain ATCC 43504]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |