Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF85_RS04660 Genome accession   NZ_CP094054
Coordinates   976621..977172 (-) Length   183 a.a.
NCBI ID   WP_245013214.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 971621..982172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS04635 (MPF85_04635) ruvC 972187..972669 (-) 483 WP_140471420.1 crossover junction endodeoxyribonuclease RuvC -
  MPF85_RS04640 (MPF85_04640) - 972799..973525 (+) 727 Protein_920 NYN domain-containing protein -
  MPF85_RS04645 (MPF85_04645) - 973585..973794 (-) 210 WP_245013211.1 hypothetical protein -
  MPF85_RS04650 (MPF85_04650) - 973912..976314 (-) 2403 WP_245013212.1 PBECR2 nuclease fold domain-containing protein -
  MPF85_RS04655 (MPF85_04655) - 976313..976606 (+) 294 WP_245013213.1 hypothetical protein -
  MPF85_RS04660 (MPF85_04660) ruvA 976621..977172 (-) 552 WP_245013214.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF85_RS04665 (MPF85_04665) - 977205..979040 (-) 1836 WP_245013215.1 FapA family protein -
  MPF85_RS04670 (MPF85_04670) murJ 979133..980593 (+) 1461 WP_245013216.1 murein biosynthesis integral membrane protein MurJ -
  MPF85_RS04675 (MPF85_04675) cysS 980594..981991 (+) 1398 WP_245013217.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20262.87 Da        Isoelectric Point: 9.3549

>NTDB_id=573554 MPF85_RS04660 WP_245013214.1 976621..977172(-) (ruvA) [Helicobacter pylori strain Hpfe125]
MIVGLIGVVEKISALEVYIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=573554 MPF85_RS04660 WP_245013214.1 976621..977172(-) (ruvA) [Helicobacter pylori strain Hpfe125]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGTATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTTTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAACAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTACGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(140-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366