Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KM398_RS18930 Genome accession   NZ_CP076207
Coordinates   3643748..3644527 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain Pollino 3734     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638748..3649527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM398_RS18905 (KM398_18905) uppS 3639495..3640271 (-) 777 WP_000971303.1 isoprenyl transferase -
  KM398_RS18910 (KM398_18910) frr 3640357..3640914 (-) 558 WP_000531503.1 ribosome recycling factor -
  KM398_RS18915 (KM398_18915) pyrH 3640917..3641639 (-) 723 WP_000042663.1 UMP kinase -
  KM398_RS18920 (KM398_18920) tsf 3641706..3642593 (-) 888 WP_001018581.1 translation elongation factor Ts -
  KM398_RS18925 (KM398_18925) rpsB 3642697..3643398 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  KM398_RS18930 (KM398_18930) codY 3643748..3644527 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KM398_RS18935 (KM398_18935) hslU 3644605..3645996 (-) 1392 WP_041515529.1 ATP-dependent protease ATPase subunit HslU -
  KM398_RS18940 (KM398_18940) hslV 3646019..3646561 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  KM398_RS18945 (KM398_18945) xerC 3646604..3647503 (-) 900 WP_001101226.1 tyrosine recombinase XerC -
  KM398_RS18950 (KM398_18950) trmFO 3647569..3648873 (-) 1305 WP_003161605.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=573526 KM398_RS18930 WP_000421288.1 3643748..3644527(-) (codY) [Bacillus anthracis strain Pollino 3734]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=573526 KM398_RS18930 WP_000421288.1 3643748..3644527(-) (codY) [Bacillus anthracis strain Pollino 3734]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459