Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KM400_RS20890 Genome accession   NZ_CP076187
Coordinates   3993600..3994394 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus anthracis str. BF1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3988600..3999394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM400_RS20870 (KM400_20850) - 3990401..3990634 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  KM400_RS20875 (KM400_20855) - 3990683..3991411 (-) 729 WP_000172562.1 glycerophosphodiester phosphodiesterase -
  KM400_RS20880 (KM400_20860) - 3991462..3991608 (+) 147 WP_001247671.1 YycC family protein -
  KM400_RS20885 (KM400_20865) - 3991776..3993302 (-) 1527 WP_000218387.1 glycosyltransferase family 39 protein -
  KM400_RS20890 (KM400_20870) spo0A 3993600..3994394 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  KM400_RS20895 (KM400_20875) spoIVB 3994682..3995980 (-) 1299 WP_003172258.1 SpoIVB peptidase -
  KM400_RS20900 (KM400_20880) recN 3996099..3997838 (-) 1740 WP_000947756.1 DNA repair protein RecN Machinery gene
  KM400_RS20905 (KM400_20885) argR 3998106..3998555 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=573202 KM400_RS20890 WP_003161566.1 3993600..3994394(-) (spo0A) [Bacillus anthracis str. BF1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=573202 KM400_RS20890 WP_003161566.1 3993600..3994394(-) (spo0A) [Bacillus anthracis str. BF1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCAAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818