Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MQG43_RS00490 Genome accession   NZ_CP093910
Coordinates   97631..98320 (+) Length   229 a.a.
NCBI ID   WP_005547547.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 27R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92631..103320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG43_RS00465 nanQ 92910..93380 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  MQG43_RS00470 ampD 93854..94408 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MQG43_RS00475 pilA 94530..94982 (+) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MQG43_RS00480 pilB 95009..96418 (+) 1410 WP_019518272.1 GspE/PulE family protein Machinery gene
  MQG43_RS00485 pilC 96411..97634 (+) 1224 WP_005547544.1 type II secretion system F family protein Machinery gene
  MQG43_RS00490 pilD 97631..98320 (+) 690 WP_005547547.1 A24 family peptidase Machinery gene
  MQG43_RS00495 coaE 98370..98993 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  MQG43_RS00500 yacG 98983..99195 (+) 213 WP_005547550.1 DNA gyrase inhibitor YacG -
  MQG43_RS00505 - 99195..99467 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  MQG43_RS00510 - 99864..101237 (+) 1374 WP_005547554.1 sodium:alanine symporter family protein -
  MQG43_RS00515 raiA 101466..101789 (+) 324 WP_005540708.1 ribosome-associated translation inhibitor RaiA -
  MQG43_RS00520 - 101939..102493 (+) 555 WP_005547559.1 DUF5358 domain-containing protein -
  MQG43_RS10280 - 102771..102933 (-) 163 Protein_103 phosphoribosylformylglycinamidine synthase subunit PurQ -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26018.72 Da        Isoelectric Point: 8.2297

>NTDB_id=572487 MQG43_RS00490 WP_005547547.1 97631..98320(+) (pilD) [Aggregatibacter actinomycetemcomitans strain 27R]
MMWLLFLLGGALCGWRVHRYVEHFADNLSREVHAAYTEIYPQNPPHFTAEKSILKPLKRHFSAPLYSLLFTLLFIICYAI
NEPLQALCFALYGALLIAISLVDWHYRLISPALCQALFTLGLGAAYWQIGTLTLEQSLQSAVVFFGVFYAIYHAAKWYYR
QEALGRGDYWLALGLGVFLPAHQFPVFLFLACFFGLLYAAYAKYQHRTLNAVPFGPFMSLAGVVCLLLN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=572487 MQG43_RS00490 WP_005547547.1 97631..98320(+) (pilD) [Aggregatibacter actinomycetemcomitans strain 27R]
ATGATGTGGCTACTTTTTTTGCTTGGTGGCGCACTATGCGGGTGGCGTGTTCATCGTTATGTAGAACATTTCGCCGATAA
CCTCAGCCGCGAGGTTCATGCCGCCTACACGGAAATTTACCCGCAAAACCCACCGCACTTTACAGCGGAAAAGTCGATTC
TGAAACCGCTTAAACGGCATTTTTCCGCGCCCCTTTACAGCCTTTTATTCACCTTGCTGTTCATTATTTGTTATGCCATC
AATGAACCGTTACAAGCCCTATGCTTTGCCCTTTATGGCGCCTTATTAATTGCCATTTCCCTAGTGGATTGGCACTATCG
CTTGATTTCACCCGCCTTATGCCAAGCCTTGTTTACCCTCGGTTTAGGCGCGGCATACTGGCAAATCGGCACATTAACAT
TGGAGCAAAGCCTGCAAAGTGCGGTTGTTTTTTTCGGTGTTTTTTATGCCATCTACCACGCCGCAAAATGGTACTACCGA
CAAGAAGCTCTCGGACGCGGCGATTATTGGTTGGCACTGGGCTTAGGCGTTTTTCTCCCGGCACACCAATTTCCTGTTTT
TTTATTCCTCGCCTGCTTTTTCGGCTTACTTTATGCTGCCTACGCCAAATACCAACATCGCACACTCAACGCCGTGCCTT
TCGGTCCCTTTATGTCCCTAGCCGGCGTGGTCTGTTTATTGCTTAATTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.301

100

0.393
  pilD Haemophilus influenzae Rd KW20

38.839

97.817

0.38