Detailed information NTG0572218

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: MN088_RS10515
• Genome accession: NZ_CP093413
• Coordinates: 2073554..2074630 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis strain AH1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2068554..2079630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MN088_RS10490 (MN088_10490)	pgsA	2068714..2069286 (-)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
MN088_RS10495 (MN088_10495)	-	2069327..2070223 (-)	897	WP_010906239.1	RodZ family helix-turn-helix domain-containing protein	-
MN088_RS10500 (MN088_10500)	-	2070435..2071718 (-)	1284	WP_004254752.1	pitrilysin family protein	-
MN088_RS10505 (MN088_10505)	-	2071708..2072994 (-)	1287	WP_021214872.1	pitrilysin family protein	-
MN088_RS10510 (MN088_10510)	yaaA	2073192..2073554 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
MN088_RS10515 (MN088_10515)	recF	2073554..2074630 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
MN088_RS10520 (MN088_10520)	-	2074717..2075085 (-)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
MN088_RS10525 (MN088_10525)	-	2075163..2075540 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
MN088_RS10530 (MN088_10530)	-	2075553..2076497 (-)	945	WP_010906244.1	alpha/beta hydrolase	-
MN088_RS10535 (MN088_10535)	galE	2076620..2077600 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=572218 MN088_RS10515 WP_010906242.1 2073554..2074630(+) (recF) [Lactococcus lactis strain AH1]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=572218 MN088_RS10515 WP_010906242.1 2073554..2074630(+) (recF) [Lactococcus lactis strain AH1]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447