Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KM132_RS17275 Genome accession   NZ_CP076119
Coordinates   3529273..3529962 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain NZ4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524273..3534962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM132_RS17240 (KM132_17240) fliW 3524364..3524795 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  KM132_RS17245 (KM132_17245) - 3524825..3525394 (-) 570 WP_003151397.1 DUF6470 family protein -
  KM132_RS17250 (KM132_17250) flgL 3525485..3526402 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KM132_RS17255 (KM132_17255) flgK 3526414..3527931 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  KM132_RS17260 (KM132_17260) - 3527947..3528429 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KM132_RS17265 (KM132_17265) flgM 3528444..3528710 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KM132_RS17270 (KM132_17270) - 3528780..3529199 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  KM132_RS17275 (KM132_17275) comFC 3529273..3529962 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  KM132_RS17280 (KM132_17280) - 3529968..3530252 (-) 285 WP_003151389.1 competence protein ComFB -
  KM132_RS17285 (KM132_17285) comFA 3530310..3531695 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  KM132_RS17290 (KM132_17290) - 3531803..3532651 (-) 849 WP_003151387.1 DegV family protein -
  KM132_RS17295 (KM132_17295) degU 3532749..3533438 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KM132_RS17300 (KM132_17300) degS 3533515..3534678 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=572136 KM132_RS17275 WP_199449054.1 3529273..3529962(-) (comFC) [Bacillus velezensis strain NZ4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=572136 KM132_RS17275 WP_199449054.1 3529273..3529962(-) (comFC) [Bacillus velezensis strain NZ4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598