Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   KMZ33_RS07220 Genome accession   NZ_CP076113
Coordinates   1516572..1517117 (-) Length   181 a.a.
NCBI ID   WP_241951131.1    Uniprot ID   -
Organism   Pasteurella multocida strain GS2020-X2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511572..1522117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ33_RS07195 - 1511782..1512219 (-) 438 WP_005758199.1 isoprenylcysteine carboxylmethyltransferase family protein -
  KMZ33_RS07200 - 1512432..1513043 (-) 612 WP_241951129.1 YfgM family protein -
  KMZ33_RS07205 hisS 1513062..1514333 (-) 1272 WP_241951130.1 histidine--tRNA ligase -
  KMZ33_RS07210 ispG 1514363..1515466 (-) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  KMZ33_RS07215 - 1515493..1516449 (-) 957 WP_014391405.1 RodZ family helix-turn-helix domain-containing protein -
  KMZ33_RS07220 pilF/pilF2 1516572..1517117 (-) 546 WP_241951131.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  KMZ33_RS07225 - 1517157..1518341 (-) 1185 WP_005725120.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  KMZ33_RS07230 - 1518520..1519773 (-) 1254 WP_005725114.1 AI-2E family transporter -
  KMZ33_RS07235 glnB 1519774..1520112 (-) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  KMZ33_RS07240 mog 1520157..1520735 (-) 579 WP_241951132.1 molybdopterin adenylyltransferase -
  KMZ33_RS07245 - 1520761..1521690 (-) 930 WP_005725108.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20883.42 Da        Isoelectric Point: 7.8913

>NTDB_id=571951 KMZ33_RS07220 WP_241951131.1 1516572..1517117(-) (pilF/pilF2) [Pasteurella multocida strain GS2020-X2]
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDAARYQQ
NLQHLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=571951 KMZ33_RS07220 WP_241951131.1 1516572..1517117(-) (pilF/pilF2) [Pasteurella multocida strain GS2020-X2]
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGTGATGTATTAAA
TAATTATGGTACTTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTGGTTTGGTGTGCGTCTTTTGCCAAAGACGCTGCCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

50.568

97.238

0.492
  pilF Glaesserella parasuis strain SC1401

44.385

100

0.459