Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   CPZ03_RS21705 Genome accession   NZ_AP017617
Coordinates   4301614..4302606 (+) Length   330 a.a.
NCBI ID   WP_000224500.1    Uniprot ID   -
Organism   Escherichia coli strain MRY15-117     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4296614..4307606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ03_RS21680 (MRY15117_c39720) rbsD 4296738..4297157 (+) 420 WP_000715936.1 D-ribose pyranase -
  CPZ03_RS21685 (MRY15117_c39730) rbsA 4297165..4298670 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  CPZ03_RS21690 (MRY15117_c39740) rbsC 4298675..4299640 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  CPZ03_RS21695 (MRY15117_c39750) rbsB 4299665..4300555 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  CPZ03_RS21700 (MRY15117_c39760) rbsK 4300681..4301610 (+) 930 WP_001361791.1 ribokinase -
  CPZ03_RS21705 (MRY15117_c39770) cytR 4301614..4302606 (+) 993 WP_000224500.1 ribose operon transcriptional repressor RbsR Regulator
  CPZ03_RS21710 (MRY15117_c39780) mdtD 4302572..4303999 (-) 1428 WP_061092921.1 multidrug transporter subunit MdtD -
  CPZ03_RS21715 (MRY15117_c39790) yieP 4304022..4304714 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36626.88 Da        Isoelectric Point: 5.2141

>NTDB_id=57189 CPZ03_RS21705 WP_000224500.1 4301614..4302606(+) (cytR) [Escherichia coli strain MRY15-117]
MATMKDVARQAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=57189 CPZ03_RS21705 WP_000224500.1 4301614..4302606(+) (cytR) [Escherichia coli strain MRY15-117]
TTGGCTACAATGAAAGATGTTGCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATCGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment