Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HCBAA847_RS11015 Genome accession   NC_020555
Coordinates   2137316..2137738 (-) Length   140 a.a.
NCBI ID   WP_015453882.1    Uniprot ID   A0AAI8ML12
Organism   Helicobacter cinaedi CCUG 18818 = ATCC BAA-847     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2132316..2142738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCBAA847_RS10995 (HCBAA847_2263) cysE 2132323..2133081 (-) 759 WP_014667432.1 serine O-acetyltransferase -
  HCBAA847_RS11000 (HCBAA847_2264) speA 2133095..2134945 (-) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  HCBAA847_RS11005 (HCBAA847_2265) ybeY 2135070..2135735 (+) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  HCBAA847_RS12225 - 2136314..2136637 (+) 324 WP_133247155.1 hypothetical protein -
  HCBAA847_RS11010 (HCBAA847_2266) - 2136575..2137216 (-) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  HCBAA847_RS11015 (HCBAA847_2267) dprB 2137316..2137738 (-) 423 WP_015453882.1 Holliday junction resolvase RuvX Machinery gene
  HCBAA847_RS11020 (HCBAA847_2268) dprA 2137738..2138523 (-) 786 WP_002955973.1 DNA-processing protein DprA Machinery gene
  HCBAA847_RS11025 (HCBAA847_2269) - 2138560..2139642 (-) 1083 WP_015453883.1 divergent polysaccharide deacetylase family protein -
  HCBAA847_RS11030 (HCBAA847_2270) minE 2139643..2139894 (-) 252 WP_002955975.1 cell division topological specificity factor MinE -
  HCBAA847_RS11035 (HCBAA847_2271) minD 2139891..2140706 (-) 816 WP_002955976.1 septum site-determining protein MinD -
  HCBAA847_RS11040 (HCBAA847_2272) - 2140773..2141324 (-) 552 WP_002955977.1 hypothetical protein -
  HCBAA847_RS11045 (HCBAA847_2273) - 2141324..2142238 (-) 915 WP_002955978.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15490.96 Da        Isoelectric Point: 7.1676

>NTDB_id=57180 HCBAA847_RS11015 WP_015453882.1 2137316..2137738(-) (dprB) [Helicobacter cinaedi CCUG 18818 = ATCC BAA-847]
MENKKILACDVGLKRIGFAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=57180 HCBAA847_RS11015 WP_015453882.1 2137316..2137738(-) (dprB) [Helicobacter cinaedi CCUG 18818 = ATCC BAA-847]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTTGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493

Multiple sequence alignment