Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HCBAA847_RS05665 Genome accession   NC_020555
Coordinates   1128930..1130771 (+) Length   613 a.a.
NCBI ID   WP_172618405.1    Uniprot ID   -
Organism   Helicobacter cinaedi CCUG 18818 = ATCC BAA-847     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123930..1135771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCBAA847_RS05635 (HCBAA847_1152) mog 1124361..1124891 (+) 531 WP_014666653.1 molybdopterin adenylyltransferase -
  HCBAA847_RS05640 (HCBAA847_1153) moaC 1124913..1125389 (+) 477 WP_002956810.1 cyclic pyranopterin monophosphate synthase MoaC -
  HCBAA847_RS05645 (HCBAA847_1154) rmuC 1125399..1126742 (+) 1344 WP_002956812.1 DNA recombination protein RmuC -
  HCBAA847_RS05650 (HCBAA847_1155) nadB 1126757..1128202 (-) 1446 WP_002956814.1 L-aspartate oxidase -
  HCBAA847_RS05655 (HCBAA847_1156) - 1128203..1128451 (-) 249 WP_002956815.1 hypothetical protein -
  HCBAA847_RS05660 (HCBAA847_1157) - 1128443..1128901 (+) 459 WP_002956816.1 hypothetical protein -
  HCBAA847_RS05665 (HCBAA847_1158) uvrC 1128930..1130771 (+) 1842 WP_172618405.1 excinuclease ABC subunit UvrC Machinery gene
  HCBAA847_RS05670 (HCBAA847_1159) - 1130768..1132249 (+) 1482 WP_015453521.1 hypothetical protein -
  HCBAA847_RS05675 (HCBAA847_1160) - 1132259..1133761 (+) 1503 WP_002956819.1 sensor histidine kinase -
  HCBAA847_RS05680 (HCBAA847_1161) - 1133764..1134453 (+) 690 WP_015453522.1 response regulator -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 70708.22 Da        Isoelectric Point: 9.7330

>NTDB_id=57175 HCBAA847_RS05665 WP_172618405.1 1128930..1130771(+) (uvrC) [Helicobacter cinaedi CCUG 18818 = ATCC BAA-847]
MYSLLFTLQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQVAKIHTLLTQSQE
DALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSATFPRFEITRKALQSKHIEYFGPFVSGARELLDSLYDALPLVQKK
SCLKGKKACIFHQIHKCPAPCENKISQSQYAEYITQAKAFIDDRKGLIEILESKMQILSHNLQFEEAAKIRDRIQKLKTL
KTQSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLAQLYTQALLNHYKTPLPLPPKEILIP
HFDFQDKDEKDDLQKILQAQTQSHLKITQPQKGTKYNLLQLAKKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVP
YRIEIFDTSHHSGSHNVGGMVVYENGEFIRSAYRRFELHSSDEYSQMSEMLTRRAKKFESNPPPDLWLLDGGKAQINLAL
DILKSVGANVDIIAIAKMKYNAKAYRAKGNALDILRTQNAEFKLSTNDKRLQFCQKLRDEVHRYAITYHRNKKQKDIHKI
QIQKGSDMDSSYSKAQIKQLLDYFGSFHAFQNAPKEQIENALSRSFKSNKDSK

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=57175 HCBAA847_RS05665 WP_172618405.1 1128930..1130771(+) (uvrC) [Helicobacter cinaedi CCUG 18818 = ATCC BAA-847]
ATATATAGTCTGCTTTTTACCCTGCAAAATCTCCCTACACAGCCCGGAATCTACCAATATTTTGATAAAGATGATAACTT
GCTCTATGTCGGCAAGGCTAAAAATCTAAAAAATCGCATAAAAAGCTATTTTTCTATCCATAATGACATCATCACGCCAA
AGGCTAACCTTAGCCAAAGAATAGCCCTTATGGTATCCCAAGTGGCTAAGATTCACACTTTACTTACACAAAGCCAAGAA
GATGCCCTTATCCTTGAAAACTCCCTTATCAAAAGCCTAAAGCCAAAGTATAATATTCTTTTGCGTGATGATAAAACTTA
TCCTTATATTTATATTGATACTTCTGCTACTTTTCCACGATTTGAAATCACTCGCAAGGCGCTACAAAGTAAGCATATTG
AGTATTTTGGTCCTTTTGTGAGTGGAGCTAGAGAGCTGCTTGATAGTCTCTATGATGCCCTGCCCCTTGTGCAGAAAAAA
TCCTGCCTTAAAGGCAAAAAGGCGTGTATATTTCATCAGATTCATAAATGCCCTGCCCCTTGTGAAAATAAAATCTCTCA
AAGTCAATATGCAGAGTATATTACACAAGCAAAGGCGTTTATAGATGATAGAAAAGGACTTATAGAGATTTTAGAATCTA
AAATGCAGATACTCTCACACAATCTACAATTTGAAGAGGCAGCAAAGATACGAGATAGAATCCAAAAGCTAAAAACACTA
AAAACCCAATCTATTATTGATATTATGAGCGGAGATTATGATATTTTCTTGCTTGATTCAGCAGGGCAAAATCATATCCT
TATGATGCTTTTTATCCGCAATGGACGCATTGTCTCAAGTGATTTTTCATTTATCCACCAAGAGATTCACAGCCAAAACC
TAGCCCAACTCTACACCCAAGCCTTACTTAATCACTATAAAACCCCTCTTCCCTTGCCACCAAAGGAGATTCTTATCCCG
CATTTTGACTTCCAAGACAAAGATGAAAAAGATGATTTACAAAAGATTTTGCAAGCCCAAACACAAAGTCATCTCAAAAT
CACCCAACCACAAAAAGGCACAAAATATAACCTTTTGCAACTTGCTAAAAAGAACGCCCAAGAAATCCTAACTTTGCATA
CCAAAGAGCAAAAGAACGCCCAAAATGAAAACACCACTTTATACGCTCTAAAAGATTTATGCAATCTCTCTCAAGTGCCT
TATAGGATAGAGATCTTTGACACCTCTCATCATAGCGGAAGCCACAATGTAGGCGGAATGGTAGTGTATGAAAATGGCGA
GTTTATCCGCAGTGCTTACAGACGCTTTGAGCTTCATAGCAGTGATGAATACTCTCAAATGAGTGAAATGCTAACACGCA
GGGCAAAAAAATTTGAATCCAATCCGCCACCAGATTTATGGCTACTTGATGGGGGCAAGGCTCAAATCAACCTAGCACTT
GACATTCTAAAAAGTGTGGGGGCAAATGTAGATATTATCGCCATTGCCAAAATGAAATATAATGCCAAAGCCTATCGCGC
TAAAGGCAATGCCCTTGATATTTTACGCACACAAAATGCGGAGTTTAAACTTAGCACAAACGATAAAAGACTACAATTCT
GCCAAAAGCTCCGCGATGAAGTGCATAGATATGCTATCACTTATCATCGCAACAAAAAGCAAAAAGACATACACAAGATT
CAGATTCAAAAAGGAAGTGATATGGATAGCTCTTATAGCAAGGCTCAAATTAAACAACTTTTAGATTATTTTGGCTCATT
CCACGCCTTTCAAAACGCTCCAAAAGAACAGATAGAAAATGCTCTTTCACGCTCTTTTAAAAGTAATAAAGATTCAAAAT
GA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(207-239)

GIY-YIG catalytic domain (GIY-YIG)

(15-98)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(392-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.912

98.369

0.501

Multiple sequence alignment