Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   KH238_RS16025 Genome accession   NZ_CP076045
Coordinates   3299975..3300094 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain VCN56     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3294975..3305094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS16005 (KH238_16005) - 3295325..3295837 (+) 513 Protein_3160 bacteriocin biosynthesis protein AlbG -
  KH238_RS16010 (KH238_16010) - 3295844..3297220 (-) 1377 WP_032867382.1 YncE family protein -
  KH238_RS16015 (KH238_16015) - 3297260..3298615 (-) 1356 WP_032867380.1 YncE family protein -
  KH238_RS16020 (KH238_16020) rapF 3298846..3299991 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  KH238_RS16025 (KH238_16025) phrF 3299975..3300094 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KH238_RS16030 (KH238_16030) - 3300292..3300495 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  KH238_RS16035 (KH238_16035) - 3300509..3300712 (+) 204 WP_007407641.1 hypothetical protein -
  KH238_RS16040 (KH238_16040) - 3300747..3300932 (+) 186 WP_032868172.1 DUF4177 domain-containing protein -
  KH238_RS16045 (KH238_16045) - 3301118..3301399 (+) 282 WP_007407643.1 hypothetical protein -
  KH238_RS16050 (KH238_16050) - 3301443..3301955 (+) 513 WP_007407644.1 stage II sporulation protein M -
  KH238_RS16055 (KH238_16055) - 3302546..3302764 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  KH238_RS16060 (KH238_16060) speB 3302932..3303804 (-) 873 WP_007614448.1 agmatinase -
  KH238_RS16065 (KH238_16065) speE 3303863..3304693 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=571643 KH238_RS16025 WP_007407639.1 3299975..3300094(+) (phrF) [Bacillus velezensis strain VCN56]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=571643 KH238_RS16025 WP_007407639.1 3299975..3300094(+) (phrF) [Bacillus velezensis strain VCN56]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462