Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CPZ03_RS14170 Genome accession   NZ_AP017617
Coordinates   2832788..2834449 (+) Length   553 a.a.
NCBI ID   WP_000880914.1    Uniprot ID   -
Organism   Escherichia coli strain MRY15-117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2827788..2839449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ03_RS14145 (MRY15117_c25880) ypjD 2828956..2829747 (+) 792 WP_001338897.1 inner membrane protein YpjD -
  CPZ03_RS14150 (MRY15117_c25890) yfjD 2829768..2831054 (+) 1287 WP_010723175.1 HlyC/CorC family transporter -
  CPZ03_RS14155 (MRY15117_c25900) grpE 2831108..2831701 (-) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  CPZ03_RS14165 (MRY15117_c25910) nadK 2831824..2832702 (+) 879 WP_001059169.1 NAD(+) kinase -
  CPZ03_RS14170 (MRY15117_c25920) recN 2832788..2834449 (+) 1662 WP_000880914.1 DNA repair protein RecN Machinery gene
  CPZ03_RS14175 (MRY15117_c25930) bamE 2834598..2834939 (+) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  CPZ03_RS14180 (MRY15117_c25940) yfjF 2835001..2835291 (-) 291 WP_001117840.1 RnfH family protein -
  CPZ03_RS14185 (MRY15117_c25950) ratA 2835281..2835718 (-) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  CPZ03_RS14190 (MRY15117_c25960) smpB 2835889..2836371 (+) 483 WP_000162574.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61353.29 Da        Isoelectric Point: 5.1819

>NTDB_id=57159 CPZ03_RS14170 WP_000880914.1 2832788..2834449(+) (recN) [Escherichia coli strain MRY15-117]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETANALHQQRQHYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMESLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=57159 CPZ03_RS14170 WP_000880914.1 2832788..2834449(+) (recN) [Escherichia coli strain MRY15-117]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGTGCCGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCGGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AATTACTCACCAAACCTGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTACTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGTGCTGCCCGTGC
GGAGCTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGATGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTAAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGACCTCG
ATCCTAACCGACTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTAGAAACCGCGAACGCATTACACCAGCAACGCCAGCACTATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCACTCTCTATGCCGCATGGGCAGTTTACGATTGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGCGCCGATCGTATTGAATTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCACGCATCGCATTGGCAATTCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGCCCAACAGCGGCAGTTGTTGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGGAGTCGCTGGACAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.975

100

0.38
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365

Multiple sequence alignment