Detailed information NTG0571580

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: KH238_RS00260
• Genome accession: NZ_CP076045
• Coordinates: 76041..77189 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain VCN56
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 71041..82189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KH238_RS00240 (KH238_00240)	-	71462..72145 (-)	684	WP_032866951.1	ABC transporter ATP-binding protein	-
KH238_RS00245 (KH238_00245)	-	72160..73572 (-)	1413	WP_020955321.1	FtsX-like permease family protein	-
KH238_RS00250 (KH238_00250)	-	73785..74468 (+)	684	WP_007410267.1	response regulator transcription factor	-
KH238_RS00255 (KH238_00255)	-	74455..75888 (+)	1434	WP_020955322.1	ATP-binding protein	-
KH238_RS00260 (KH238_00260)	rapC	76041..77189 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
KH238_RS00265 (KH238_00265)	phrC	77173..77292 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
KH238_RS00270 (KH238_00270)	-	77442..77537 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
KH238_RS00275 (KH238_00275)	-	77632..78996 (-)	1365	WP_032866947.1	aspartate kinase	-
KH238_RS00280 (KH238_00280)	ceuB	79410..80363 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
KH238_RS00285 (KH238_00285)	-	80353..81300 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
KH238_RS00290 (KH238_00290)	-	81294..82052 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=571580 KH238_RS00260 WP_007410270.1 76041..77189(+) (rapC) [Bacillus velezensis strain VCN56]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=571580 KH238_RS00260 WP_007410270.1 76041..77189(+) (rapC) [Bacillus velezensis strain VCN56]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCAGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568