Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KI244_RS03700 Genome accession   NZ_CP076029
Coordinates   730295..731167 (+) Length   290 a.a.
NCBI ID   WP_045177422.1    Uniprot ID   -
Organism   Staphylococcus sp. MZ9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 725295..736167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI244_RS03680 (KI244_03680) sucC 725409..726575 (+) 1167 WP_001020799.1 ADP-forming succinate--CoA ligase subunit beta -
  KI244_RS03685 (KI244_03685) sucD 726597..727505 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  KI244_RS03690 (KI244_03690) - 727732..728850 (+) 1119 WP_001041673.1 LysM peptidoglycan-binding domain-containing protein -
  KI244_RS03695 (KI244_03695) fmhC 728878..730122 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  KI244_RS03700 (KI244_03700) dprA 730295..731167 (+) 873 WP_045177422.1 DNA-processing protein DprA Machinery gene
  KI244_RS03705 (KI244_03705) topA 731341..733416 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  KI244_RS03710 (KI244_03710) trmFO 733572..734879 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33554.95 Da        Isoelectric Point: 9.5094

>NTDB_id=571536 KI244_RS03700 WP_045177422.1 730295..731167(+) (dprA) [Staphylococcus sp. MZ9]
MIKLFLLKLYWAHFSTKQIHQFLMAYSNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=571536 KI244_RS03700 WP_045177422.1 730295..731167(+) (dprA) [Staphylococcus sp. MZ9]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATTC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993