Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KI239_RS06370 Genome accession   NZ_CP076028
Coordinates   1298428..1299300 (+) Length   290 a.a.
NCBI ID   WP_045177422.1    Uniprot ID   -
Organism   Staphylococcus sp. MZ8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1293428..1304300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI239_RS06350 (KI239_06350) sucC 1293542..1294708 (+) 1167 WP_001020799.1 ADP-forming succinate--CoA ligase subunit beta -
  KI239_RS06355 (KI239_06355) sucD 1294730..1295638 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  KI239_RS06360 (KI239_06360) - 1295865..1296983 (+) 1119 WP_001041673.1 LysM peptidoglycan-binding domain-containing protein -
  KI239_RS06365 (KI239_06365) fmhC 1297011..1298255 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  KI239_RS06370 (KI239_06370) dprA 1298428..1299300 (+) 873 WP_045177422.1 DNA-processing protein DprA Machinery gene
  KI239_RS06375 (KI239_06375) topA 1299474..1301549 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  KI239_RS06380 (KI239_06380) trmFO 1301705..1303012 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33554.95 Da        Isoelectric Point: 9.5094

>NTDB_id=571499 KI239_RS06370 WP_045177422.1 1298428..1299300(+) (dprA) [Staphylococcus sp. MZ8]
MIKLFLLKLYWAHFSTKQIHQFLMAYSNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=571499 KI239_RS06370 WP_045177422.1 1298428..1299300(+) (dprA) [Staphylococcus sp. MZ8]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATTC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993