Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KI230_RS06145 Genome accession   NZ_CP076026
Coordinates   1261915..1262787 (+) Length   290 a.a.
NCBI ID   WP_045177422.1    Uniprot ID   -
Organism   Staphylococcus sp. MZ3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1256915..1267787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI230_RS06125 (KI230_06125) sucC 1257029..1258195 (+) 1167 WP_001020799.1 ADP-forming succinate--CoA ligase subunit beta -
  KI230_RS06130 (KI230_06130) sucD 1258217..1259125 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  KI230_RS06135 (KI230_06135) - 1259352..1260470 (+) 1119 WP_001041673.1 LysM peptidoglycan-binding domain-containing protein -
  KI230_RS06140 (KI230_06140) fmhC 1260498..1261742 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  KI230_RS06145 (KI230_06145) dprA 1261915..1262787 (+) 873 WP_045177422.1 DNA-processing protein DprA Machinery gene
  KI230_RS06150 (KI230_06150) topA 1262961..1265036 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  KI230_RS06155 (KI230_06155) trmFO 1265192..1266499 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33554.95 Da        Isoelectric Point: 9.5094

>NTDB_id=571416 KI230_RS06145 WP_045177422.1 1261915..1262787(+) (dprA) [Staphylococcus sp. MZ3]
MIKLFLLKLYWAHFSTKQIHQFLMAYSNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=571416 KI230_RS06145 WP_045177422.1 1261915..1262787(+) (dprA) [Staphylococcus sp. MZ3]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATTC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993