Detailed information NTG0057124

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: R2APBS1_RS03350
• Genome accession: NC_020541
• Coordinates: 767506..768894 (-)
• Length: 462 a.a.
• NCBI ID: WP_015446878.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 762506..773894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2APBS1_RS03330 (R2APBS1_0686)	-	762635..763081 (+)	447	WP_007507367.1	response regulator	-
R2APBS1_RS03335 (R2APBS1_0687)	-	763179..764714 (+)	1536	WP_007507365.1	response regulator	-
R2APBS1_RS03340 (R2APBS1_0688)	-	764750..766081 (+)	1332	WP_015446876.1	FtsX-like permease family protein	-
R2APBS1_RS03345 (R2APBS1_0689)	-	766078..767343 (+)	1266	WP_015446877.1	FtsX-like permease family protein	-
R2APBS1_RS03350 (R2APBS1_0690)	pilR	767506..768894 (-)	1389	WP_015446878.1	sigma-54 dependent transcriptional regulator	Regulator
R2APBS1_RS03355 (R2APBS1_0691)	-	769064..771310 (-)	2247	WP_015446879.1	glycosyl hydrolase family 65 protein	-
R2APBS1_RS03360 (R2APBS1_0692)	-	771330..772598 (-)	1269	WP_015446880.1	MFS transporter	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49981.13 Da
• Isoelectric Point: 5.9821

>NTDB_id=57124 R2APBS1_RS03350 WP_015446878.1 767506..768894(-) (pilR) [Rhodanobacter denitrificans]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEVIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRRGSFTGASTDKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGDSVGQLSPSAREALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAAAGQ
PPTPVAAAAGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=57124 R2APBS1_RS03350 WP_015446878.1 767506..768894(-) (pilR) [Rhodanobacter denitrificans]
ATGAACCCCCAGACCGTTTTGGTCATCGATGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCGCGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGGTCATCGAGCTGATCGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTGCGCACCGCGCTGCGCCTCGCCGAGGAACGGCGCACCGGCGCCGCCGCGGCGAAGA
CCGGCGACTCCAGCGACCGCCTGATCGGCGACTCCACCGCCATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCGCGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAGCAGGGTCC
GCGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACC
GCAGGGGCAGCTTCACCGGCGCCAGCACCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAAGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATTCTTTCCGCCACCCACAAGAACCTCGGCCAGCTGGTCGAACAGGGCCAGT
TCCGCCAGGACCTGTTCTATCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGCCG
CAATTGTCCGCATTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGACAGCGTGGGCCAGTTGTCGCCGTCCGCGCGCGA
GGCGCTGGAGGCGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGATCAGCCACGAGCCGGCCGCAGCGGGACAG
CCGCCGACACCCGTCGCGGCCGCCGCCGGCGCGGACGGCGGCCTCGACGACTACATCAGCAACCTGGAGCGCACCGCCAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.606	100	0.606
pilR	Acinetobacter baumannii strain A118	47.403	100	0.474