Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   MNG38_RS08450 Genome accession   NZ_CP093289
Coordinates   1598647..1599672 (+) Length   341 a.a.
NCBI ID   WP_015252148.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593647..1604672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS08415 (MNG38_08415) ylbE 1593947..1594186 (+) 240 WP_003232231.1 YlbE-like family protein -
  MNG38_RS08420 (MNG38_08420) ylbF 1594302..1594751 (+) 450 WP_044052537.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  MNG38_RS08425 (MNG38_08425) ylbG 1594806..1595078 (+) 273 WP_015715839.1 YlbG family protein -
  MNG38_RS08430 (MNG38_08430) rsmD 1595401..1595955 (+) 555 WP_015252150.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MNG38_RS08435 (MNG38_08435) coaD 1595960..1596445 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  MNG38_RS08440 (MNG38_08440) spoVV 1596456..1597682 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  MNG38_RS08445 (MNG38_08445) ylbK 1597863..1598645 (+) 783 WP_003232221.1 patatin family protein -
  MNG38_RS08450 (MNG38_08450) sepM 1598647..1599672 (+) 1026 WP_015252148.1 protease DdcP Regulator
  MNG38_RS08455 (MNG38_08455) tmcAL 1599689..1600936 (-) 1248 WP_015252147.1 nucleotidyltransferase -
  MNG38_RS08460 (MNG38_08460) - 1600933..1601118 (-) 186 WP_003232215.1 hypothetical protein -
  MNG38_RS08465 (MNG38_08465) ylbN 1601146..1601664 (+) 519 WP_014479718.1 YceD family protein -
  MNG38_RS08470 (MNG38_08470) rpmF 1601686..1601865 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  MNG38_RS08475 (MNG38_08475) gerR 1602011..1602592 (+) 582 WP_044052536.1 sporulation specific transcriptional regulator GerR -
  MNG38_RS08480 (MNG38_08480) ylbP 1602649..1603131 (-) 483 WP_014476736.1 N-acetyltransferase -
  MNG38_RS08485 (MNG38_08485) panEA 1603291..1604187 (+) 897 WP_015252144.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37685.25 Da        Isoelectric Point: 6.5347

>NTDB_id=570899 MNG38_RS08450 WP_015252148.1 1598647..1599672(+) (sepM) [Bacillus subtilis strain H2]
MLRKKHFSWMVVILILIAFLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=570899 MNG38_RS08450 WP_015252148.1 1598647..1599672(+) (sepM) [Bacillus subtilis strain H2]
TTGCTACGTAAAAAACATTTTAGCTGGATGGTCGTCATCCTCATACTGATCGCCTTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(36-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399