Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   MNG38_RS08420 Genome accession   NZ_CP093289
Coordinates   1594302..1594751 (+) Length   149 a.a.
NCBI ID   WP_044052537.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589302..1599751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS08380 (MNG38_08380) ctaE 1589318..1589941 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  MNG38_RS08385 (MNG38_08385) ctaF 1589944..1590276 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  MNG38_RS08390 (MNG38_08390) ctaG 1590304..1591197 (+) 894 WP_061891196.1 cytochrome c oxidase assembly factor CtaG -
  MNG38_RS08395 (MNG38_08395) ylbA 1591229..1591591 (-) 363 WP_003232238.1 YugN family protein -
  MNG38_RS08400 (MNG38_08400) ylbB 1591731..1592177 (+) 447 WP_029726520.1 CBS domain-containing protein -
  MNG38_RS08405 (MNG38_08405) ylbC 1592261..1593301 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  MNG38_RS08410 (MNG38_08410) ylbD 1593533..1593931 (+) 399 WP_003232233.1 YlbD family protein -
  MNG38_RS08415 (MNG38_08415) ylbE 1593947..1594186 (+) 240 WP_003232231.1 YlbE-like family protein -
  MNG38_RS08420 (MNG38_08420) ylbF 1594302..1594751 (+) 450 WP_044052537.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  MNG38_RS08425 (MNG38_08425) ylbG 1594806..1595078 (+) 273 WP_015715839.1 YlbG family protein -
  MNG38_RS08430 (MNG38_08430) rsmD 1595401..1595955 (+) 555 WP_015252150.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MNG38_RS08435 (MNG38_08435) coaD 1595960..1596445 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  MNG38_RS08440 (MNG38_08440) spoVV 1596456..1597682 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  MNG38_RS08445 (MNG38_08445) ylbK 1597863..1598645 (+) 783 WP_003232221.1 patatin family protein -
  MNG38_RS08450 (MNG38_08450) sepM 1598647..1599672 (+) 1026 WP_015252148.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16942.01 Da        Isoelectric Point: 4.9284

>NTDB_id=570898 MNG38_RS08420 WP_044052537.1 1594302..1594751(+) (ylbF) [Bacillus subtilis strain H2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVVDFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=570898 MNG38_RS08420 WP_044052537.1 1594302..1594751(+) (ylbF) [Bacillus subtilis strain H2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGGCGGATTATTCGTTCTTTTATTAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGTTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993