Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJW29_RS27680 Genome accession   NZ_CP075889
Coordinates   6896299..6896859 (-) Length   186 a.a.
NCBI ID   WP_087568497.1    Uniprot ID   -
Organism   Paenibacillus agaridevorans strain HCL2020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6891299..6901859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJW29_RS27650 - 6891379..6892770 (+) 1392 WP_214627092.1 TrkH family potassium uptake protein -
  KJW29_RS27655 - 6892853..6894304 (-) 1452 WP_214627093.1 SulP family inorganic anion transporter -
  KJW29_RS27665 - 6895354..6895614 (-) 261 WP_214627095.1 metal-sensitive transcriptional regulator -
  KJW29_RS27670 - 6895746..6895862 (-) 117 Protein_5494 rhodanese-like domain-containing protein -
  KJW29_RS27675 rpsR 6895987..6896271 (-) 285 WP_087568496.1 30S ribosomal protein S18 -
  KJW29_RS27680 ssbA 6896299..6896859 (-) 561 WP_087568497.1 single-stranded DNA-binding protein Machinery gene
  KJW29_RS27685 rpsF 6896895..6897179 (-) 285 WP_108994426.1 30S ribosomal protein S6 -
  KJW29_RS27690 - 6897339..6898283 (-) 945 WP_214627097.1 ABC transporter substrate-binding protein -
  KJW29_RS27695 - 6898445..6900007 (-) 1563 WP_214627098.1 AraC family transcriptional regulator -
  KJW29_RS27700 - 6900201..6900383 (+) 183 WP_214627099.1 YjzC family protein -
  KJW29_RS27705 - 6900692..6901405 (-) 714 WP_214627100.1 ankyrin repeat domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19726.38 Da        Isoelectric Point: 4.8857

>NTDB_id=570734 KJW29_RS27680 WP_087568497.1 6896299..6896859(-) (ssbA) [Paenibacillus agaridevorans strain HCL2020]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFSSAGQGGEREREADFIPIVTWRQLAETCANYLRKGRLAAVEGR
IQVRNYENNEGKRVYVTEVIADNVRFLESNRENSGAPRDENSGGGGGYGGGNSGGGYSGGSNAGGGGSSYGGGSRSGGSR
NDGNSNSDPFKDDGRPIDISEDDLPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=570734 KJW29_RS27680 WP_087568497.1 6896299..6896859(-) (ssbA) [Paenibacillus agaridevorans strain HCL2020]
ATGTTGAACCGTGTCATACTGATTGGCAGATTGACGAGGGATCCCGAGCTGCGTTATACGCCTGCCGGAGTTGCGGTAAC
GCAATTCACGCTGGCTGTAGACCGGCCATTCTCGTCAGCAGGTCAAGGCGGAGAACGCGAGCGCGAAGCGGATTTCATTC
CGATCGTTACATGGCGTCAGCTGGCTGAAACATGCGCAAACTACTTACGCAAAGGTCGTTTAGCGGCCGTTGAAGGACGC
ATTCAAGTGCGGAATTACGAGAACAATGAGGGCAAACGTGTGTATGTAACGGAAGTTATTGCAGACAATGTCCGGTTCCT
GGAGTCCAATCGCGAGAACAGCGGAGCTCCGCGTGATGAGAACAGCGGCGGTGGAGGCGGATACGGCGGCGGCAATTCGG
GCGGCGGATACAGTGGAGGAAGCAATGCTGGCGGTGGTGGTTCATCCTATGGCGGCGGAAGCCGTTCGGGCGGATCGCGC
AACGACGGCAATAGCAACAGCGATCCTTTCAAGGATGACGGACGTCCAATCGACATTTCCGAAGATGATTTACCATTTTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.684

100

0.57
  ssb Latilactobacillus sakei subsp. sakei 23K

43.548

100

0.435