Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MNY24_RS05990 Genome accession   NZ_CP093226
Coordinates   1226728..1227465 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC-16-35     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1221728..1232465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY24_RS05960 yfiL 1221886..1222251 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  MNY24_RS05965 aroF 1222461..1223531 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MNY24_RS05970 tyrA 1223542..1224663 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MNY24_RS05975 pheA 1224706..1225866 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  MNY24_RS05980 pheL 1225965..1226012 (-) 48 WP_010723158.1 phe operon leader peptide -
  MNY24_RS05985 raiA 1226116..1226457 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MNY24_RS05990 comL 1226728..1227465 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MNY24_RS05995 rluD 1227600..1228580 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MNY24_RS06000 yfiH 1228577..1229308 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  MNY24_RS06005 clpC 1229438..1232011 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=570697 MNY24_RS05990 WP_000197686.1 1226728..1227465(-) (comL) [Escherichia coli strain EC-16-35]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=570697 MNY24_RS05990 WP_000197686.1 1226728..1227465(-) (comL) [Escherichia coli strain EC-16-35]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376