Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   MMZ68_RS13535 Genome accession   NZ_CP093028
Coordinates   2812325..2812969 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain H05     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2807325..2817969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ68_RS13520 (MMZ68_13520) - 2807959..2809173 (+) 1215 WP_003108786.1 MFS transporter -
  MMZ68_RS13525 (MMZ68_13525) - 2809189..2810217 (-) 1029 WP_019485641.1 AraC family transcriptional regulator -
  MMZ68_RS13530 (MMZ68_13530) pqsH 2810835..2811983 (+) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  MMZ68_RS13535 (MMZ68_13535) letA 2812325..2812969 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  MMZ68_RS13540 (MMZ68_13540) uvrC 2812970..2814796 (+) 1827 WP_003090350.1 excinuclease ABC subunit UvrC -
  MMZ68_RS13545 (MMZ68_13545) pgsA 2814830..2815390 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MMZ68_RS13555 (MMZ68_13555) - 2816062..2816373 (+) 312 WP_034057070.1 hypothetical protein -
  MMZ68_RS13560 (MMZ68_13560) - 2817082..2817453 (-) 372 WP_071543422.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=569980 MMZ68_RS13535 WP_003090351.1 2812325..2812969(+) (letA) [Pseudomonas aeruginosa strain H05]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=569980 MMZ68_RS13535 WP_003090351.1 2812325..2812969(+) (letA) [Pseudomonas aeruginosa strain H05]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537