Detailed information NTG0569804

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KHO27_RS18120
• Genome accession: NZ_CP075595
• Coordinates: 3995664..3996530 (+)
• Length: 288 a.a.
• NCBI ID: WP_214500595.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RC3H12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3990664..4001530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO27_RS18090 (KHO27_18090)	-	3990844..3991104 (-)	261	WP_192441622.1	AlpA family transcriptional regulator	-
KHO27_RS18095 (KHO27_18095)	-	3991203..3991958 (-)	756	WP_214500592.1	hypothetical protein	-
KHO27_RS18100 (KHO27_18100)	-	3992230..3993519 (-)	1290	WP_083567633.1	integrase arm-type DNA-binding domain-containing protein	-
KHO27_RS18110 (KHO27_18110)	-	3993815..3994225 (-)	411	WP_214500593.1	pilin	-
KHO27_RS18115 (KHO27_18115)	-	3994453..3995661 (+)	1209	WP_214500594.1	type II secretion system F family protein	-
KHO27_RS18120 (KHO27_18120)	pilD	3995664..3996530 (+)	867	WP_214500595.1	A24 family peptidase	Machinery gene
KHO27_RS18125 (KHO27_18125)	coaE	3996530..3997153 (+)	624	WP_038706809.1	dephospho-CoA kinase	-
KHO27_RS18130 (KHO27_18130)	yacG	3997150..3997350 (+)	201	WP_046854173.1	DNA gyrase inhibitor YacG	-
KHO27_RS18135 (KHO27_18135)	-	3997510..3998217 (-)	708	WP_102682144.1	energy-coupling factor ABC transporter permease	-
KHO27_RS18140 (KHO27_18140)	-	3998304..3998735 (+)	432	WP_214500596.1	hypothetical protein	-
KHO27_RS18145 (KHO27_18145)	-	3998791..3999420 (+)	630	WP_038706811.1	DUF1780 domain-containing protein	-
KHO27_RS18150 (KHO27_18150)	-	3999553..3999726 (+)	174	WP_023631877.1	DUF3094 family protein	-
KHO27_RS18155 (KHO27_18155)	-	3999811..4001106 (+)	1296	WP_139668878.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31670.79 Da
• Isoelectric Point: 7.2985

>NTDB_id=569804 KHO27_RS18120 WP_214500595.1 3995664..3996530(+) (pilD) [Pseudomonas sp. RC3H12]
MNAWTVIVDHPPFFYALAAVLGLLVGSFLNVLAYRLPIMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRQIRA
WENIPVLSYLALRGRCSGCKARISARYPLVELATALLSLLVAWHFGPGVEALAVMLLTWGLIALSLIDAEHQLLPDVLVL
PLLWLGLIGNAFGLLVPLSDALWGAVAGYLSLWSVYWVFKLITGKEGMGFGDFKLLAMLGAWGGWQILPLTLMLASLVGA
LIGLTLVRFKRTQMGAALPFGPYLAIAGWIALLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=569804 KHO27_RS18120 WP_214500595.1 3995664..3996530(+) (pilD) [Pseudomonas sp. RC3H12]
ATGAATGCCTGGACCGTAATCGTCGATCATCCGCCGTTTTTCTACGCTCTGGCCGCCGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTACCGGCTGCCGATCATGCTCGAGCGCCAGTGGCAGCGAGAGGCGCAGGAGGTGCTGGGGC
TGCCGCAGGCCGAGCACGAGCGCTTCGACCTGTGCCTGCCGGCTTCGCGTTGCCCGCACTGCCAGCGCCAGATTCGCGCG
TGGGAAAACATTCCTGTGCTGAGTTACCTGGCCTTGCGTGGGCGTTGCTCGGGGTGCAAGGCACGGATCAGTGCGCGTTA
TCCACTCGTGGAGCTGGCCACCGCGCTGCTGTCGCTGTTGGTCGCTTGGCATTTCGGGCCAGGCGTGGAGGCGCTGGCAG
TGATGCTGCTGACCTGGGGATTGATCGCCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGATTGATCGGCAACGCCTTCGGGCTGCTGGTGCCGCTGAGCGATGCGCTGTGGGGCGCGGTGGC
GGGTTACCTGAGTTTGTGGTCGGTGTACTGGGTCTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA
AGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGATGCTGGCGTCCTTGGTGGGGGCG
CTGATCGGGCTGACCCTGGTGCGTTTCAAGCGCACGCAAATGGGCGCGGCATTGCCTTTCGGGCCTTATCTGGCCATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCATACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.914	96.875	0.542
pilD	Acinetobacter baumannii D1279779	52.399	94.097	0.493
pilD	Vibrio campbellii strain DS40M4	50.903	96.181	0.49
pilD	Acinetobacter nosocomialis M2	51.292	94.097	0.483
pilD	Neisseria gonorrhoeae MS11	51.301	93.403	0.479