Detailed information NTG0569796

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KHO27_RS03865
• Genome accession: NZ_CP075595
• Coordinates: 821951..824161 (+)
• Length: 736 a.a.
• NCBI ID: WP_214501230.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RC3H12
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 816951..829161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO27_RS03835 (KHO27_03835)	-	817923..818162 (-)	240	WP_110698189.1	DUF3077 domain-containing protein	-
KHO27_RS03840 (KHO27_03840)	-	818159..818398 (-)	240	WP_214501226.1	hypothetical protein	-
KHO27_RS03845 (KHO27_03845)	-	818801..819424 (+)	624	WP_214501227.1	glutathione S-transferase	-
KHO27_RS03850 (KHO27_03850)	-	819558..820490 (+)	933	WP_214501228.1	ABC transporter ATP-binding protein	-
KHO27_RS03855 (KHO27_03855)	-	820487..821266 (+)	780	WP_046856545.1	ABC transporter permease	-
KHO27_RS03860 (KHO27_03860)	-	821150..821806 (-)	657	WP_214501229.1	DUF2062 domain-containing protein	-
KHO27_RS03865 (KHO27_03865)	comA	821951..824161 (+)	2211	WP_214501230.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KHO27_RS03870 (KHO27_03870)	exbB	824286..824921 (+)	636	WP_110703965.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KHO27_RS03875 (KHO27_03875)	-	824918..825352 (+)	435	WP_023632003.1	biopolymer transporter ExbD	-
KHO27_RS03880 (KHO27_03880)	lpxK	825352..826362 (+)	1011	WP_110703899.1	tetraacyldisaccharide 4'-kinase	-
KHO27_RS03885 (KHO27_03885)	-	826396..826581 (+)	186	WP_003247142.1	Trm112 family protein	-
KHO27_RS03890 (KHO27_03890)	kdsB	826578..827342 (+)	765	WP_214501231.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KHO27_RS03895 (KHO27_03895)	-	827342..827806 (+)	465	WP_111532688.1	low molecular weight protein-tyrosine-phosphatase	-
KHO27_RS03900 (KHO27_03900)	murB	827803..828822 (+)	1020	WP_214501232.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79443.30 Da
• Isoelectric Point: 11.2311

>NTDB_id=569796 KHO27_RS03865 WP_214501230.1 821951..824161(+) (comA) [Pseudomonas sp. RC3H12]
MRTGMLALVLGLLSLRFLPVLPPVGWLIPLLLLALACLRTRAWPLGWFVLGGCWACWSAQQALDDRLAPALDGRTLWLEG
RVVGLPTRTERGVRFELEHPESRRAQLPRRLQLSWFAGPELRAGERLRLAVNLRQPHGLLNPHGPDREALLLARGIGATG
SVKAGEQVGQAAVDWRDAVRQRLMNVDAHGREAALAALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPSRWPWLPWACGLAMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALSGVLLINPL
ASLLPGFWLSFAAVGVLILCFSARLGAWRPWQAWSRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISFAVLPLAL
LGTATLPVPGVGEGLLWLAGLSLDGLFRLLAQLAGQLPAWLPEPLPLSAWLLVALGALLVLLPRGVPLRLPGAVMLVALW
APREQVPLGQVQVWQLDVGQGLAVLLRTRHHALLYDAGPAHGDSDLGESVVLPTLRRLGVKRLDLMLVSHGHADHAGGAA
AVRRGLPVTRVLAGEAAGLAPVALCESGERWRWDGVDFELWHWPQGTSSNDRSCVLRVVAKGERLLLAGDMEAAAERAWL
AASEDPRVDWLQAPHHGSRTSSTEPFIKALAPRGVMISRGRSNGFGHPHAQVVERYRRHGVQVHDTALAGALSLRLGSQG
AVVAVRAERRFWRERE

Nucleotide

• Length: 2211 bp

>NTDB_id=569796 KHO27_RS03865 WP_214501230.1 821951..824161(+) (comA) [Pseudomonas sp. RC3H12]
ATGCGCACAGGGATGCTGGCGCTGGTGCTCGGGCTGTTGAGCCTGCGTTTTTTGCCCGTTTTGCCGCCGGTCGGGTGGCT
GATTCCGTTGCTGTTGCTGGCCCTGGCCTGCCTGCGCACGCGGGCCTGGCCGCTGGGCTGGTTTGTGCTGGGTGGCTGCT
GGGCCTGCTGGTCAGCGCAGCAGGCGCTGGATGATCGCCTGGCCCCGGCGCTGGATGGCCGCACGCTGTGGTTGGAGGGG
CGGGTGGTGGGGCTGCCGACCCGCACGGAGCGTGGCGTGCGTTTCGAGCTGGAGCATCCTGAGTCGCGTCGGGCGCAATT
GCCCAGGCGCCTGCAACTGAGCTGGTTTGCCGGGCCTGAATTGCGCGCCGGTGAGCGCTTGCGCCTGGCGGTAAATTTGC
GCCAGCCCCACGGGCTGCTCAACCCCCATGGCCCGGACCGCGAAGCATTGTTGTTGGCCCGGGGTATCGGCGCCACCGGC
TCGGTCAAGGCCGGCGAGCAGGTCGGGCAGGCTGCGGTGGATTGGCGCGATGCCGTGCGTCAGCGGTTGATGAACGTGGA
TGCCCACGGCCGCGAGGCGGCGCTGGCGGCCTTGGTGCTGGGCGATGGCGCCGGGCTGGCCCGCGAGGACTGGCAGACCC
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCATATCGGGCTGTTGGCCGGGCTGGTGTACGGCCTG
GTCGCGGGCCTGGCGCGGCTGGGTGCCTGGCCATCGCGCTGGCCATGGCTGCCCTGGGCTTGTGGCCTGGCCATGGCCGC
GGCATTGGGCTACGGCTGGCTGGCCGGCTTCGGCGTACCGGTGCAACGGGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTCAGGCACCTGGGGGCAGCCTTGCCGCTGCTGTTGGCGTTGTCGGGGGTGTTGCTGATCAATCCGTTG
GCCAGCCTGCTGCCGGGTTTCTGGCTGTCATTTGCCGCGGTTGGCGTGCTGATACTGTGCTTCTCAGCCCGGCTCGGCGC
CTGGCGGCCCTGGCAGGCCTGGAGCCGTGCCCAGTGGGTAATTGCCGTGGGTCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGGTCAGCCTGACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTTTCGCGGTGTTGCCGCTGGCCTTG
CTTGGCACGGCGACGTTGCCGGTGCCTGGGGTGGGGGAGGGGCTGCTGTGGCTGGCGGGCCTTTCGCTGGATGGGCTGTT
TCGCCTGCTGGCGCAGCTTGCGGGGCAGTTGCCTGCATGGCTGCCCGAGCCGTTGCCGCTGTCGGCCTGGCTGTTGGTCG
CGTTGGGCGCGCTGTTGGTGTTGCTGCCTCGGGGCGTGCCGTTGCGCTTGCCGGGCGCGGTGATGCTGGTGGCCTTGTGG
GCGCCGCGCGAGCAGGTGCCCCTTGGGCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTGCTGCTGCG
TACCCGTCATCACGCGCTGTTGTACGACGCCGGGCCTGCCCACGGGGACAGCGACCTGGGCGAGAGCGTGGTGCTGCCGA
CCTTGCGCAGGTTGGGGGTAAAGCGCCTGGATCTGATGCTGGTCAGCCACGGTCACGCCGATCATGCCGGCGGGGCGGCG
GCGGTGCGCCGGGGGCTGCCGGTAACGCGGGTGCTGGCCGGGGAGGCTGCCGGGCTTGCGCCTGTCGCGCTGTGCGAAAG
TGGTGAGCGCTGGCGCTGGGATGGGGTCGATTTCGAGCTGTGGCATTGGCCGCAAGGCACGTCCAGCAACGACCGTTCCT
GTGTGCTGCGGGTGGTGGCCAAAGGCGAGCGCCTGTTGCTGGCCGGCGACATGGAGGCCGCGGCGGAGCGGGCTTGGCTG
GCGGCCAGCGAGGATCCGCGTGTCGACTGGCTGCAGGCGCCGCACCACGGCAGCCGCACGTCGTCCACCGAACCGTTCAT
CAAGGCGCTGGCGCCACGCGGGGTGATGATTTCGCGGGGACGCAGCAACGGCTTCGGGCATCCGCATGCGCAGGTGGTCG
AGCGCTATCGGCGGCATGGGGTGCAGGTGCATGACACGGCGCTGGCGGGGGCGCTGAGTTTGCGCCTGGGGAGTCAGGGT
GCAGTGGTAGCGGTGCGCGCAGAGCGCAGGTTCTGGCGGGAGCGCGAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-461)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-675)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.223	97.962	0.58
comA	Ralstonia pseudosolanacearum GMI1000	35.986	100	0.412