Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MMZ72_RS26835 Genome accession   NZ_CP093021
Coordinates   5801916..5802515 (-) Length   199 a.a.
NCBI ID   WP_024916550.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5796916..5807515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS26815 (MMZ72_26815) aroK 5798047..5798565 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MMZ72_RS26820 (MMZ72_26820) pilQ 5798577..5800721 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  MMZ72_RS26825 (MMZ72_26825) comL/pilP 5800775..5801299 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MMZ72_RS26830 (MMZ72_26830) pilO 5801296..5801919 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMZ72_RS26835 (MMZ72_26835) pilN 5801916..5802515 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN Machinery gene
  MMZ72_RS26840 (MMZ72_26840) pilM 5802515..5803579 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MMZ72_RS26845 (MMZ72_26845) - 5803764..5806235 (+) 2472 WP_024916551.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22288.62 Da        Isoelectric Point: 10.3054

>NTDB_id=569713 MMZ72_RS26835 WP_024916550.1 5801916..5802515(-) (pilN) [Pseudomonas aeruginosa strain H09]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGRNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEANAKAKNGVAQGAKK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=569713 MMZ72_RS26835 WP_024916550.1 5801916..5802515(-) (pilN) [Pseudomonas aeruginosa strain H09]
ATGGCGCGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTCGGCGG
TGTCCTGGTGGCATCGGCGGCGCTGGTGTTCCTTGGCGACCAGTATTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTGCTCGATGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCGATCATCGGTCGGGTGTTCGACCAGCTCGTACG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAGGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGATGCGTCCGAATGGCTGACCGCGCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAGCTGACCGTGCAGCAGACGCAGCCCGGCGAGGAGGCGAACGC
CAAGGCGAAGAATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

87.94

0.367