Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   MMZ72_RS26825 Genome accession   NZ_CP093021
Coordinates   5800775..5801299 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain H09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5795775..5806299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS26810 (MMZ72_26810) aroB 5796891..5797997 (-) 1107 WP_058140600.1 3-dehydroquinate synthase -
  MMZ72_RS26815 (MMZ72_26815) aroK 5798047..5798565 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MMZ72_RS26820 (MMZ72_26820) pilQ 5798577..5800721 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  MMZ72_RS26825 (MMZ72_26825) comL/pilP 5800775..5801299 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MMZ72_RS26830 (MMZ72_26830) pilO 5801296..5801919 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMZ72_RS26835 (MMZ72_26835) pilN 5801916..5802515 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN Machinery gene
  MMZ72_RS26840 (MMZ72_26840) pilM 5802515..5803579 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MMZ72_RS26845 (MMZ72_26845) - 5803764..5806235 (+) 2472 WP_024916551.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=569711 MMZ72_RS26825 WP_003095836.1 5800775..5801299(-) (comL/pilP) [Pseudomonas aeruginosa strain H09]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=569711 MMZ72_RS26825 WP_003095836.1 5800775..5801299(-) (comL/pilP) [Pseudomonas aeruginosa strain H09]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGACCT
GCAGTCCTACATGGATGAAGTTCGTGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGTCCGTTCCAGCCTCCGGTGAAGATCGACCTGACGGTACGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGTACCTTCGCCCTGGTGAAAGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362