Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MMZ72_RS03620 Genome accession   NZ_CP093021
Coordinates   762157..762654 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain H09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 757157..767654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS03605 (MMZ72_03605) bfr 757165..757629 (+) 465 WP_003093668.1 bacterioferritin -
  MMZ72_RS03610 (MMZ72_03610) uvrA 757700..760537 (-) 2838 WP_024917980.1 excinuclease ABC subunit UvrA Machinery gene
  MMZ72_RS03615 (MMZ72_03615) - 760752..762140 (+) 1389 WP_024917981.1 MFS transporter -
  MMZ72_RS03620 (MMZ72_03620) ssb 762157..762654 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  MMZ72_RS03625 (MMZ72_03625) - 762785..764062 (+) 1278 WP_241469381.1 site-specific integrase -
  MMZ72_RS03630 (MMZ72_03630) - 764055..765602 (+) 1548 WP_241469382.1 site-specific integrase -
  MMZ72_RS03635 (MMZ72_03635) - 765595..767646 (+) 2052 WP_241469383.1 integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=569645 MMZ72_RS03620 WP_003114685.1 762157..762654(+) (ssb) [Pseudomonas aeruginosa strain H09]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=569645 MMZ72_RS03620 WP_003114685.1 762157..762654(+) (ssb) [Pseudomonas aeruginosa strain H09]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTATCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGCTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515