Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KJP35_RS05365 Genome accession   NZ_CP075563
Coordinates   1111517..1111912 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sta2021027     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1106517..1116912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP35_RS05335 (KJP35_05285) - 1107742..1108146 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KJP35_RS05340 (KJP35_05290) - 1108515..1108607 (+) 93 WP_045177772.1 hypothetical protein -
  KJP35_RS05345 (KJP35_05295) - 1108739..1108972 (+) 234 WP_000384523.1 DUF1146 family protein -
  KJP35_RS05350 (KJP35_05300) murA 1109083..1110348 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KJP35_RS05355 (KJP35_05305) fabZ 1110382..1110822 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KJP35_RS05360 (KJP35_05310) - 1110883..1111323 (-) 441 WP_000846746.1 YwpF-like family protein -
  KJP35_RS05365 (KJP35_05315) ssb 1111517..1111912 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KJP35_RS05370 (KJP35_05320) sceD 1112301..1112996 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  KJP35_RS05375 (KJP35_05325) tenA 1113578..1114267 (+) 690 WP_000396072.1 thiaminase II -
  KJP35_RS05380 (KJP35_05330) thiD 1114260..1115090 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KJP35_RS05385 (KJP35_05335) thiM 1115074..1115865 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  KJP35_RS05390 (KJP35_05340) thiE 1115867..1116508 (+) 642 WP_000483164.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=569633 KJP35_RS05365 WP_000932694.1 1111517..1111912(+) (ssb) [Staphylococcus aureus strain Sta2021027]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=569633 KJP35_RS05365 WP_000932694.1 1111517..1111912(+) (ssb) [Staphylococcus aureus strain Sta2021027]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992