Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KIW23_RS01705 Genome accession   NZ_CP075561
Coordinates   379534..380040 (+) Length   168 a.a.
NCBI ID   WP_070792367.1    Uniprot ID   -
Organism   Floricoccus penangensis strain ML061-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374534..385040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIW23_RS01680 (KIW23_01690) - 374998..375297 (-) 300 WP_251315152.1 DUF2316 family protein -
  KIW23_RS01685 (KIW23_01695) - 375468..376205 (-) 738 WP_070787015.1 amino acid ABC transporter ATP-binding protein -
  KIW23_RS01690 (KIW23_01700) - 376205..377767 (-) 1563 WP_070787014.1 ABC transporter permease subunit -
  KIW23_RS01695 (KIW23_01705) - 378184..379017 (+) 834 WP_251315153.1 undecaprenyl-diphosphate phosphatase -
  KIW23_RS01700 (KIW23_01710) rpsF 379205..379498 (+) 294 WP_070787012.1 30S ribosomal protein S6 -
  KIW23_RS01705 (KIW23_01715) ssbA 379534..380040 (+) 507 WP_070792367.1 single-stranded DNA-binding protein Machinery gene
  KIW23_RS01710 (KIW23_01720) rpsR 380172..380417 (+) 246 WP_070787010.1 30S ribosomal protein S18 -
  KIW23_RS01715 (KIW23_01725) - 380497..380805 (-) 309 WP_251315154.1 DUF960 domain-containing protein -
  KIW23_RS01720 (KIW23_01730) - 380916..381599 (+) 684 WP_251315155.1 pseudouridine synthase -
  KIW23_RS01725 (KIW23_01735) recX 381596..382387 (-) 792 WP_251315648.1 recombination regulator RecX -
  KIW23_RS01730 (KIW23_01740) - 382548..382733 (+) 186 WP_371827958.1 helix-turn-helix transcriptional regulator -
  KIW23_RS01735 (KIW23_01745) - 382746..383063 (+) 318 WP_251315156.1 hypothetical protein -
  KIW23_RS01740 (KIW23_01750) - 383265..383555 (+) 291 WP_251315157.1 hypothetical protein -
  KIW23_RS01745 (KIW23_01755) - 383576..383917 (+) 342 WP_251315158.1 DUF2178 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18349.91 Da        Isoelectric Point: 4.6968

>NTDB_id=569555 KIW23_RS01705 WP_070792367.1 379534..380040(+) (ssbA) [Floricoccus penangensis strain ML061-4]
MINNVVLVGRLTKDIELRQTASGQSNTSFTLAITRNFKNQNGEYDADFVQVVAWRQTAEFLARFGAKKGNLLGVTGRIQT
RNYENQQGQRVYVTEVVADNVTFLESRATRESQGGSTGGGYQAPQGNSNNNSYGSSTQQNNVPDFGRNDSDPFGGGSPIN
IDDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=569555 KIW23_RS01705 WP_070792367.1 379534..380040(+) (ssbA) [Floricoccus penangensis strain ML061-4]
ATGATTAATAACGTAGTATTGGTAGGGCGTTTGACAAAAGACATCGAGCTTCGTCAAACTGCTAGCGGACAATCAAATAC
AAGTTTCACCCTTGCGATTACTCGTAATTTCAAGAACCAAAATGGTGAATATGATGCTGACTTTGTTCAAGTAGTAGCTT
GGAGACAAACCGCAGAATTTTTAGCTCGTTTCGGTGCTAAAAAAGGTAATCTTCTTGGTGTTACAGGACGAATTCAAACT
CGTAATTATGAAAATCAACAAGGACAACGTGTATATGTAACTGAAGTTGTTGCTGATAATGTTACTTTCCTTGAAAGTCG
CGCAACTCGCGAAAGTCAAGGTGGTTCAACTGGTGGTGGCTATCAAGCTCCACAAGGAAACAGCAATAATAATTCATACG
GTTCATCAACTCAACAAAATAATGTTCCTGATTTCGGACGTAACGACTCTGATCCATTCGGTGGAGGAAGTCCAATCAAC
ATTGATGATGATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.299

100

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

53.216

100

0.542