Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   KHS93_RS05630 Genome accession   NZ_CP075547
Coordinates   1097493..1097684 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092493..1102684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS05600 (KHS93_05600) argF 1093346..1094317 (+) 972 WP_115996244.1 ornithine carbamoyltransferase -
  KHS93_RS05605 (KHS93_05605) - 1094393..1094572 (+) 180 WP_003155070.1 YjzC family protein -
  KHS93_RS05610 (KHS93_05610) - 1094608..1094793 (-) 186 WP_003155069.1 YjzD family protein -
  KHS93_RS05615 (KHS93_05615) - 1095054..1095788 (+) 735 WP_014304780.1 hypothetical protein -
  KHS93_RS05620 (KHS93_05620) - 1095871..1096437 (+) 567 WP_161503320.1 hypothetical protein -
  KHS93_RS05625 (KHS93_05625) med 1096527..1097480 (+) 954 WP_044053096.1 BMP family ABC transporter substrate-binding protein Regulator
  KHS93_RS05630 (KHS93_05630) comZ 1097493..1097684 (+) 192 WP_003155061.1 ComZ family protein Regulator
  KHS93_RS05635 (KHS93_05635) - 1097714..1097932 (-) 219 WP_044053097.1 hypothetical protein -
  KHS93_RS05640 (KHS93_05640) - 1098100..1099038 (+) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  KHS93_RS05645 (KHS93_05645) fabF 1099061..1100299 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  KHS93_RS05650 (KHS93_05650) - 1100383..1101168 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  KHS93_RS05655 (KHS93_05655) - 1101342..1102328 (+) 987 WP_048367994.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=569441 KHS93_RS05630 WP_003155061.1 1097493..1097684(+) (comZ) [Bacillus amyloliquefaciens strain SN16-1]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=569441 KHS93_RS05630 WP_003155061.1 1097493..1097684(+) (comZ) [Bacillus amyloliquefaciens strain SN16-1]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794