Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   KHS93_RS01740 Genome accession   NZ_CP075547
Coordinates   321158..321556 (-) Length   132 a.a.
NCBI ID   WP_043866822.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 316158..326556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS19680 - 317157..317318 (-) 162 Protein_297 hypothetical protein -
  KHS93_RS01710 (KHS93_01710) - 317435..318637 (+) 1203 WP_069473143.1 GTP-binding protein -
  KHS93_RS01715 (KHS93_01715) - 318702..319838 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  KHS93_RS01720 (KHS93_01720) - 319853..320287 (+) 435 WP_003156592.1 RDD family protein -
  KHS93_RS01725 (KHS93_01725) - 320359..320679 (+) 321 WP_014304315.1 YckD family protein -
  KHS93_RS01730 (KHS93_01730) - 320783..320899 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  KHS93_RS01735 (KHS93_01735) - 320898..321117 (+) 220 Protein_303 family 1 glycosylhydrolase -
  KHS93_RS01740 (KHS93_01740) nin/comJ 321158..321556 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  KHS93_RS01745 (KHS93_01745) nucA/comI 321578..322015 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KHS93_RS01750 (KHS93_01750) hxlB 322374..322931 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  KHS93_RS01755 (KHS93_01755) hxlA 322928..323563 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  KHS93_RS01760 (KHS93_01760) - 323795..324157 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 15014.99 Da        Isoelectric Point: 4.6564

>NTDB_id=569426 KHS93_RS01740 WP_043866822.1 321158..321556(-) (nin/comJ) [Bacillus amyloliquefaciens strain SN16-1]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=569426 KHS93_RS01740 WP_043866822.1 321158..321556(-) (nin/comJ) [Bacillus amyloliquefaciens strain SN16-1]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGAAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.744

97.727

0.75