Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KIK01_RS05935 Genome accession   NZ_CP075489
Coordinates   1173431..1174138 (-) Length   235 a.a.
NCBI ID   WP_250130345.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168431..1179138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS05910 (KIK01_05910) rpsO 1168726..1168995 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  KIK01_RS05915 (KIK01_05915) rpsT 1169274..1169528 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  KIK01_RS05920 (KIK01_05920) holA 1169596..1170624 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  KIK01_RS05925 (KIK01_05925) comEC 1170621..1172687 (-) 2067 WP_250130344.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KIK01_RS05930 (KIK01_05930) - 1172885..1173373 (-) 489 WP_011374770.1 ComE operon protein 2 -
  KIK01_RS05935 (KIK01_05935) comEA 1173431..1174138 (-) 708 WP_250130345.1 helix-hairpin-helix domain-containing protein Machinery gene
  KIK01_RS05940 (KIK01_05940) - 1174211..1175257 (-) 1047 WP_016265215.1 SepM family pheromone-processing serine protease -
  KIK01_RS05945 (KIK01_05945) coaD 1175259..1175756 (-) 498 WP_016265216.1 pantetheine-phosphate adenylyltransferase -
  KIK01_RS05950 (KIK01_05950) rsmD 1175769..1176323 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KIK01_RS05955 (KIK01_05955) - 1176328..1176618 (-) 291 WP_016265218.1 YlbG family protein -
  KIK01_RS05960 (KIK01_05960) - 1176642..1177730 (-) 1089 WP_016265219.1 CAP-associated domain-containing protein -
  KIK01_RS05965 (KIK01_05965) - 1177741..1178928 (-) 1188 WP_025015730.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26138.82 Da        Isoelectric Point: 9.7683

>NTDB_id=569316 KIK01_RS05935 WP_250130345.1 1173431..1174138(-) (comEA) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MMWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQTQQKQKVTHNEQLLATSASKTKPATKKTHQAATKKKGGFVDIKGAVA
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLVQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERMPEQASTG
TSANASSASDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=569316 KIK01_RS05935 WP_250130345.1 1173431..1174138(-) (comEA) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATTATCGCGGG
TGGCTTTTATTGGCATCAAACGCAACAAAAACAAAAAGTAACGCATAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
CAAAACCTGCTACTAAGAAAACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGTGCTGTGGCT
TATCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGTCCAAAAATTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATTGCAACGACCAGTGAGCGTATGCCAGAACAAGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCGCGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

97.021

100

0.97
  comEA Lactococcus lactis subsp. cremoris KW2

36.797

98.298

0.362