Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KIK01_RS05925 Genome accession   NZ_CP075489
Coordinates   1170621..1172687 (-) Length   688 a.a.
NCBI ID   WP_250130344.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1165621..1177687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS05900 (KIK01_05900) - 1165744..1166691 (-) 948 WP_025015736.1 hypothetical protein -
  KIK01_RS05905 (KIK01_05905) - 1166780..1168498 (-) 1719 WP_011374765.1 ribonuclease J -
  KIK01_RS05910 (KIK01_05910) rpsO 1168726..1168995 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  KIK01_RS05915 (KIK01_05915) rpsT 1169274..1169528 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  KIK01_RS05920 (KIK01_05920) holA 1169596..1170624 (-) 1029 WP_025015735.1 DNA polymerase III subunit delta -
  KIK01_RS05925 (KIK01_05925) comEC 1170621..1172687 (-) 2067 WP_250130344.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KIK01_RS05930 (KIK01_05930) - 1172885..1173373 (-) 489 WP_011374770.1 ComE operon protein 2 -
  KIK01_RS05935 (KIK01_05935) comEA 1173431..1174138 (-) 708 WP_250130345.1 helix-hairpin-helix domain-containing protein Machinery gene
  KIK01_RS05940 (KIK01_05940) - 1174211..1175257 (-) 1047 WP_016265215.1 SepM family pheromone-processing serine protease -
  KIK01_RS05945 (KIK01_05945) coaD 1175259..1175756 (-) 498 WP_016265216.1 pantetheine-phosphate adenylyltransferase -
  KIK01_RS05950 (KIK01_05950) rsmD 1175769..1176323 (-) 555 WP_016265217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KIK01_RS05955 (KIK01_05955) - 1176328..1176618 (-) 291 WP_016265218.1 YlbG family protein -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 77564.61 Da        Isoelectric Point: 9.8018

>NTDB_id=569314 KIK01_RS05925 WP_250130344.1 1170621..1172687(-) (comEC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFADKRRWQQVRHPVLFYGAKDFKRIQGATNQNE
FDYARFLAQQKRCFYQLTLAKETSFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGR
LGIIHLLSLSGLHVFCLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILCRLLCEQLGIRQSRLD
SWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPV
VLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKR
TLASLYLASFLAIHFNPTGQVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGV
DHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGTAFKVGPQKFNVLAPTKP
GKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSETASDPTVIKKLHLKGALISAGRENRY
GHPHQETLTTLQAAKVPYWLTAQQGMLTWSYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=569314 KIK01_RS05925 WP_250130344.1 1170621..1172687(-) (comEC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGACACAACCGCAACAACCGGTAGCACAGTATTTTAAAGTGCAACCCGATGCGATTCAAGTAGCGGGCGACAGTGTTCA
ATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAAGCTTATTATCGCTGCCAAACATTCGCCGATAAGAGGCGGT
GGCAACAAGTACGACACCCCGTTTTGTTCTATGGGGCAAAAGATTTTAAACGTATACAAGGTGCTACCAATCAAAATGAG
TTTGATTATGCACGTTTTTTAGCGCAACAGAAGCGTTGCTTTTATCAACTGACGCTGGCCAAAGAAACATCTTTTGCGCT
GAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGTCAAACGTGTGCGCTGTATTTACGTAAGTTACCAACAG
CACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCGC
TTAGGGATTATTCATCTCTTAAGTCTATCAGGCTTACACGTGTTTTGTTTAGTGCAAGTTATTCGGTGGTGTGCGACTTA
TTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTACTGCCGGTATATGCCTTACTGGTTGGTGGTACGA
CAAGCATTAGTCGCGCGATTGCGCTTATTTTATGCCGGTTACTTTGCGAACAGTTGGGCATTCGGCAATCAAGATTAGAT
AGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTT
GATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACGTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGG
TTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGATAATGATGAATGCCTTAGTAACGCCTATCTATCTACCAGTT
GTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTAGTTAACGGATGTGAGTGGCTGTTACA
GTTGATTTACAAAGGCTTAGGATTAGTCGCTCAAATCCCCCATGCGATGATTACGTTTGGTAAAATCCCCTTGTTACCAT
TACTATTGATTGTGACGGTCAGCCTCTTGTTAATCGATGGCCAGGCCATTAGCAATCAGTGGCGTAAACGGCTGAAACGC
ACATTGGCAAGTTTGTATTTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTGGCCAGGTAGTCATGTTTGATATTGG
TCAGGGTGATAGTTTGTTGATTCAAACGCCGTTTAACCGGCATCAGCTTTTAATCGATACTGGTGGCCGCCTAGCGCTAC
CGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAGCGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTA
GATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATTTGAATCAGATTTTGAAACAAATTCG
TGTTGATCGAATCATTTGTGCTGCCGGGTTACCGCAAAATCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGG
TTCAAATTGAACCCTATTTAGCCGGGACCGCTTTTAAAGTGGGGCCGCAAAAGTTTAACGTCTTAGCGCCGACTAAGCCG
GGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTAGCTGGCTGTTTACAGGGGATTTAGA
GCAAGAAGGCGAACGAGCGATTATCGAGCGGTATCCACAGTTAACCGTCGATTATTTAAAAGTTGGCCATCACGGTAGTG
AAACGGCTAGTGACCCCACCGTGATTAAAAAATTACACTTAAAAGGGGCATTAATCTCAGCCGGCAGAGAGAATCGTTAT
GGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATTGGCTAACGGCCCAGCAGGGGATGTT
GACCTGGTCGTATGGCCCCGGTCAAAGCGAAAAACTGCAAACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(427-635)

Competence protein (Competence)

(142-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

97.093

100

0.971