Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KIL00_RS19100 Genome accession   NZ_CP075344
Coordinates   3644128..3644817 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639128..3649817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS19065 (KIL00_19065) flgN 3639307..3639789 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KIL00_RS19070 (KIL00_19070) flgM 3639805..3640071 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  KIL00_RS19075 (KIL00_19075) yvyF 3640152..3640571 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  KIL00_RS19080 (KIL00_19080) comFC 3640645..3641367 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  KIL00_RS19085 (KIL00_19085) comFB 3641331..3641627 (-) 297 WP_003227989.1 late competence protein ComFB -
  KIL00_RS19090 (KIL00_19090) comFA 3641687..3643078 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  KIL00_RS19095 (KIL00_19095) fakBA 3643185..3644030 (-) 846 WP_014481053.1 DegV family protein -
  KIL00_RS19100 (KIL00_19100) degU 3644128..3644817 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  KIL00_RS19105 (KIL00_19105) degS 3644900..3646057 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KIL00_RS19110 (KIL00_19110) yvyE 3646274..3646927 (+) 654 WP_213783464.1 YigZ family protein -
  KIL00_RS19115 (KIL00_19115) tagV 3646927..3648102 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KIL00_RS19120 (KIL00_19120) tagO 3648175..3649251 (-) 1077 WP_014481064.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=568950 KIL00_RS19100 WP_014481054.1 3644128..3644817(-) (degU) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=568950 KIL00_RS19100 WP_014481054.1 3644128..3644817(-) (degU) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996